Package index
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AbxParams() - Antibiotic Parameters
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AbxRateParams() - Antibiotic Administration Rate Parameters
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ClearanceParams() - Clearance Parameters
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CodeToEvent() - Convert coded events to string events
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EventToCode() - Convert string events to coded events
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InUnitParams()ABXInUnitParams() - In Unit Parameters
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InsituParams() - InSitu Parameters
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LinearAbxAcquisitionParams() - Linear Antibiotic Acquisition Parameters
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LogNormalModelParams()LinearAbxModel() - Model Parameters for a Log Normal Model
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OutOfUnitInfectionParams() - Out of Unit Infection Parameters
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Param() - Construct a parameter with a prior, weight and an update flag.
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ParamWRate() - Specify a random testing parameter with a rate.
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ProgressionParams() - Progression Parameters
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RandomTestParams()ClinicalTestParams() - Random Testing Parameter Set
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SurveillanceTestParams() - Surveillance Test Parameters
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getCppModelParams() - Extract Model Parameters from C++ Model Object
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newCppModel() - Create a new C++ model object with parameters
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newCppModelInternal() - Create a new C++ model object wrapped in appropriate reference class
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newModelExport() - Create a new model object
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runMCMC() - Run Bayesian Transmission MCMC
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simulated.data - Simulated Transmission Data
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simulated.data_sorted - Simulated Transmission Data (Sorted)
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testHistoryLinkLogLikelihoods() - Get Individual HistoryLink Log Likelihoods (Diagnostic Function)