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In Unit Parameters

InUnitParams.Rd

In Unit Parameters

Usage

InUnitParams(
  acquisition = LinearAbxAcquisitionParams(),
  progression = ProgressionParams(),
  clearance = ClearanceParams()
)

ABXInUnitParams(
  acquisition = LinearAbxAcquisitionParams(),
  progression = ProgressionParams(),
  clearance = ClearanceParams()
)

Arguments

acquisition

Acquisition, for rate of acquisition of the disease moving into latent state.

progression

Progression from latent state to colonized state.

clearance

Clearance from colonized state to uncolonized state.

Functions

  • ABXInUnitParams(): In Unit Parameters with Antibiotics.

Examples

InUnitParams(
  acquisition = LinearAbxAcquisitionParams(),
  progression = ProgressionParams(),
  clearance = ClearanceParams()
)
#> $acquisition
#> $acquisition$base
#> $init
#> [1] 0.001
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 0.001
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$time
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$mass
#> $init
#> [1] 1
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$freq
#> $init
#> [1] 1
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$col_abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$suss_abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$suss_ever
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> 
#> $progression
#> $progression$rate
#> $init
#> [1] 0.01
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 0.01
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $progression$abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $progression$ever_abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> 
#> $clearance
#> $clearance$rate
#> $init
#> [1] 0.01
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 0.01
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $clearance$abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $clearance$ever_abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> 
ABXInUnitParams(
  acquisition = LinearAbxAcquisitionParams(),
  progression = ProgressionParams(),
  clearance = ClearanceParams()
)
#> $acquisition
#> $acquisition$base
#> $init
#> [1] 0.001
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 0.001
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$time
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$mass
#> $init
#> [1] 1
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$freq
#> $init
#> [1] 1
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$col_abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$suss_abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $acquisition$suss_ever
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> 
#> $progression
#> $progression$rate
#> $init
#> [1] 0.01
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 0.01
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $progression$abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $progression$ever_abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> 
#> $clearance
#> $clearance$rate
#> $init
#> [1] 0.01
#> 
#> $update
#> [1] TRUE
#> 
#> $prior
#> [1] 0.01
#> 
#> $weight
#> [1] 1
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $clearance$abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#> $clearance$ever_abx
#> $init
#> [1] 1
#> 
#> $update
#> [1] FALSE
#> 
#> $prior
#> [1] 1
#> 
#> $weight
#> [1] 0
#> 
#> attr(,"class")
#> [1] "Param"
#> 
#>