Changelog

Source: NEWS.md

epitraxr 0.5.0

CRAN release: 2025-09-14

• Add formatted PDF reports
• Add option to produce trend-only PDF reports
• Update installation instructions in README
• Increase file upload size limit in Shiny app
• Significant overall of function APIs for consistency, including renaming several functions:
  • get_trend() -> compute_trend()
  • get_epitrax() -> create_epitrax_from_file()
  • epitrax_add_report_diseases() -> epitrax_set_report_diseases()
  • read_report_config() -> get_report_config()
  • get_report_disease_lists() -> get_report_diseases()
  • get_internal_disease_list() -> get_report_diseases_internal()
  • get_public_disease_list() -> get_report_diseases_public()
  • format_week_num() -> mmwr_week_to_month() and format_epitrax_data() (separated different functionality into two functions)
  • write_grouped_report_pdf() -> write_report_pdf_grouped()

epitraxr 0.4.0

Major Changes

• Add Shiny app to package

Minor Changes

• Allow user to choose how many years of data to include in reports (defaults is 5 + the latest year)
• Rename prep_report_data() to standardize_report_diseases()
• Add vignette("piped-mode")
• Update vignette("epitraxr") with clearer language and examples

Bug Fixes

• Fix bug in epitrax_write_xlsxs() where it would write Excel sheets even if report lists were empty

epitraxr 0.3.2

• Create grouped reports
• Enable PDF output for some reports
• Add threshold parameter to get_trend()
• Add new report combining monthly and YTD stats
• Complete R package checklist

epitraxr 0.2.2

• Minor fixes to verify piped script matches original script behavior

epitraxr 0.2.1

• Add method for setting config programmatically

epitraxr 0.2.0

• Fully support pipe operator add report generation functions for EpiTrax object

epitraxr 0.1.3

• Add pkgdown website
• Create new EpiTrax data object

epitraxr 0.1.0

• Initial release of epitraxr package
• Core modules: Data Processing, Report Generation, Filesystem Management, Helper Functions
• Sample data included for testing and demonstration purposes
• Comprehensive testing with tinytest framework
• Full roxygen documentation for all functions