Set report diseases in EpiTrax object

epitrax_set_report_diseases reads internal and public disease lists and adds them to the EpiTrax object.

Usage

epitrax_set_report_diseases(epitrax, disease_list_files = NULL)

Arguments

epitrax

Object of class epitrax.

disease_list_files

Optional list containing filepaths to internal and public report disease lists. If omitted, the default lists will be used and a warning will be given.

Value

Updated EpiTrax object with report_diseases field set.

See also

setup_epitrax() the convenience function which wraps this function

Examples

i_file <- system.file("tinytest/test_files/disease_lists/internal_list.csv",
                       package = "epitraxr")
p_file <- system.file("tinytest/test_files/disease_lists/public_list.csv",
                       package = "epitraxr")

epitrax <- structure(
  list(data = c(1,2,3)),
  class = "epitrax"
)

epitrax <- epitrax_set_report_diseases(
  epitrax,
  disease_list_files = list(
    internal = i_file,
    public = p_file
  )
)