Package index • branchingprocess

All functions

pExtinct(): Probability that one initial case leads to an outbreak that eventually dies out (stochastic extinction)

pFinalSize(): Final outbreak size probability

pFinalSizeAndGen(): Joint probability of outbreak final size and number of transmission generations

pFinalSizeAndGenSwitch1(): Joint probability of outbreak final size and number of transmission generations with offspring distribution parameters switched after generation one

pFinalSizeAndGenSwitch2(): Joint probability of outbreak final size and number of transmission generations with offspring distribution parameters switched after generation two

pFinalSizeSwitch1(): Probability of final outbreak size with offspring distribution parameters switched after generation one

pFinalSizeSwitch2(): Probability of final outbreak size with offspring distribution parameters switched after two generations of transmission

pGen(): Probability that one initial case leads to an outbreak lasting less than g generations of transmission.

pGenSwitch1(): Probability that one initial case leads to an outbreak lasting less than g generations of transmission, with offspring distribution parameters switched after generation one.

pGenSwitch2(): Probability that one initial case leads to an outbreak lasting less than g generations of transmission, with offspring distribution parameters switched after generation two.

pNextGenSize(): Probability of y total transmission directly from x independent infected individuals

pSizeAtGen(): Probability that n initial cases lead to an outbreak that lasts at least g generations of transmission AND has exactly j total cases after generation g

pSizeAtGenSwitch1(): Probability that n initial cases lead to an outbreak that lasts at least g generations of transmission AND has exactly j total cases after generation g, with offspring distribution parameters switched after generation one