Estimate the distribution of final outbreak sizes by group using a hybrid model: stochastic simulations for smaller-sized outbreaks and deterministic ordinary differential equation model for

Estimate the distribution of final outbreak sizes by group using a hybrid model: stochastic simulations for smaller-sized outbreaks and deterministic ordinary differential equation model for "escaped" outbreaks

Usage

getFinalSizeDistEscape(
  n,
  transmrates,
  recoveryrate,
  popsize,
  initR,
  initI,
  initV
)

Arguments

n: the number of simulations to run
transmrates: matrix of group-to-group (column-to-row) transmission rates
recoveryrate: inverse of mean infectious period
popsize: the population size of each group
initR: initial number of each group already infected and removed (included in size result)
initI: initial number of each group infectious
initV: initial number of each group vaccinated

Value

a matrix with the final number infected from each group (column) in each simulation (row)