Estimate the distribution of final outbreak sizes by group using stochastic simulations of multi-group model

Estimate the distribution of final outbreak sizes by group using stochastic simulations of multi-group model

Usage

getFinalSizeDist(n, transmrates, recoveryrate, popsize, initR, initI, initV)

Arguments

n

the number of simulations to run

transmrates

matrix of group-to-group (column-to-row) transmission rates

recoveryrate

inverse of mean infectious period

popsize

the population size of each group

initR

initial number of each group already infected and removed (included in size result)

initI

initial number of each group infectious

initV

initial number of each group vaccinated

Value

a matrix with the final number infected from each group (column) in each simulation (row)