Calculate final size of outbreak: the total number of infections in each group, by solving the analytic final size equation

Calculate final size of outbreak: the total number of infections in each group, by solving the analytic final size equation

Usage

getFinalSizeAnalytic(transmrates, recoveryrate, popsize, initR, initI, initV)

Arguments

transmrates

matrix of group-to-group (column-to-row) transmission rates

recoveryrate

inverse of mean infectious period

popsize

the population size of each group

initR

initial number of each group already infected and removed (included in final size)

initI

initial number of each group infectious

initV

initial number of each group vaccinated

Value

vector of final sizes (number of infected over whole outbreak) for each group

Examples

getFinalSizeAnalytic(transmrates = matrix(0.2, 2 ,2), recoveryrate = 0.3,
popsize = c(100, 150), initR = c(0, 0), initI = c(0, 1), initV = c(10, 10))
#> [1] 31.46733 49.59954