Joint probability of outbreak final size and number of transmission generations

Joint probability of outbreak final size and number of transmission generations

Usage

pFinalSizeAndGenSwitch1(g, n, j, R0, k0, Rc, kc)

Arguments

g

Number of generations

n

Number of initial cases

j

Final size

R0

Mean of negative binomial offspring distribution from generation one

k0

Dispersion of negative binomial offspring distribution from generation one

Rc

Mean of negative binomial offspring distribution from generation two on

kc

Dispersion of negative binomial offspring distribution from generation two on

Value

The joint probability of outbreak final size and number of transmission generations

Author

Damon Toth

Examples

# Probability that 1 initial infection leads to an outbreak of final size 20 over exactly
# 3 generations of transmission:
pFinalSizeAndGenSwitch1(g=3,n=1,j=20,R0=2,k0=0.1,Rc=0.5,kc=1)
#> [1] 0.0009516172