Package index

Pipeline

Visit data to TreeScan results, one |> step at a time.

ts_visits() ts_visits_nssp()

Standardize visit-level data

ts_counts() ts_ineligible_pattern()

Build a TreeScan count file of incident diagnoses

ts_run()

Run TreeScan on a count file

ts_results()

Read TreeScan results

Parameter files and binary

ts_prm_read() ts_prm_template() ts_prm_set() ts_prm_get() ts_prm_write()

TreeScan parameter files

ts_binary()

Locate the TreeScan command-line binary

Package

treescanr treescanr-package

treescanr: Tree-Based Scan Statistics for Syndromic Surveillance