Forecasting and Surveillance of Infectious Threats and Epidemics (ForeSITE) An Insight Net Center for Integration

ForeSITE Related Publications

2025

Transmission thresholds for the spread of infections in healthcare facilities.
Transmission thresholds for the spread of infections in healthcare facilities.
Damon J A Toth, Karim Khader, Christopher Mitchell, Matthew H Samore
PLoS computational biology  ·  15 Oct 2025  ·  doi:10.1371/journal.pcbi.1013577
Assessing Public Health Capacity for Infectious Disease Modeling: A Qualitative Study of State and Local Agencies.
Assessing Public Health Capacity for Infectious Disease Modeling: A Qualitative Study of State and Local Agencies.
Skyler J Crouch, Katie S Allen, Delaney Thornton, Joel Hartsell, Elizabeth H Weybright, Julia E Szymczak, Kimberley I Shoaf
International journal of environmental research and public health  ·  20 Aug 2025  ·  doi:10.3390/ijerph22081301
Optimizing Timing for Respiratory Syncytial Virus Prevention Interventions for Infants.
Optimizing Timing for Respiratory Syncytial Virus Prevention Interventions for Infants.
Nguyen D, Lee H, Pavia AT, Nelson RE, Samore M, Chaiyakunapruk N
JAMA network open  ·  01 Jul 2025  ·  doi:10.1001/jamanetworkopen.2025.22779
What drives the effectiveness of social distancing in combating COVID-19 across U.S. states?
What drives the effectiveness of social distancing in combating COVID-19 across U.S. states?
Mu-Jeung Yang, Maclean Gaulin, Nathan Seegert, Yang Fan
PLOS One  ·  12 May 2025  ·  doi:10.1371/journal.pone.0308244
A Theoretical Framework to Quantify the Tradeoff Between Individual and Population Benefits of Expanded Antibiotic Use
A Theoretical Framework to Quantify the Tradeoff Between Individual and Population Benefits of Expanded Antibiotic Use
Cormac R. LaPrete, Sharia M. Ahmed, Damon J. A. Toth, Jody R. Reimer, Valerie M. Vaughn, Frederick R. Adler, Lindsay T. Keegan
Bulletin of Mathematical Biology  ·  30 Apr 2025  ·  doi:10.1007/s11538-025-01432-2
Understanding macroeconomic indicators affected by COVID-19 containment policies in the United States: a scoping review.
Understanding macroeconomic indicators affected by COVID-19 containment policies in the United States: a scoping review.
Jeong-Yeon Cho, Tejashree Prakash, Wayne Lam, Nathan Seegert, Matthew H Samore, Andrew T Pavia, Richard E Nelson, Nathorn Chaiyakunapruk
Health affairs scholar  ·  06 Mar 2025  ·  doi:10.1093/haschl/qxaf045
Time-varying reproductive number estimation for practical application in structured populations.
Time-varying reproductive number estimation for practical application in structured populations.
Clancey E, Lofgren ET
Epidemiologic methods  ·  06 Jan 2025  ·  doi:10.1515/em-2024-0020

2024

Unexpected Transmission Dynamics in a University Town: Lessons from COVID-19
Unexpected Transmission Dynamics in a University Town: Lessons from COVID-19
Erin Clancey, Matthew S Mietchen, Corrin McMichael, Eric T Lofgren
Epidemiology (Cambridge, Mass.)  ·  11 Jan 2024  ·  doi:10.1101/2024.01.10.24301116

2023

Assessing the Impact of Mask Mandates on SARS-CoV-2 Transmission: A Case Study of Utah
Assessing the Impact of Mask Mandates on SARS-CoV-2 Transmission: A Case Study of Utah
Horn AC, Shoemaker HE, Keegan LT
medRxiv  ·  13 Nov 2023  ·  doi:10.1101/2023.11.13.23298464
Characterizing spatiotemporal variation in transmission heterogeneity during the 2022 mpox outbreak in the USA
Characterizing spatiotemporal variation in transmission heterogeneity during the 2022 mpox outbreak in the USA
Love J, LaPrete CR, Sheets TR, Vega Yon GG, Thomas A, …, Keegan LT, Adler FR, Slayton RB, Spicknall IH, Toth DJ
medRxiv  ·  14 May 2023  ·  doi:10.1101/2023.05.10.23289580

2022

Revisiting the Question of Fan Attendance at Professional Sporting Events
Revisiting the Question of Fan Attendance at Professional Sporting Events
Stephanie S. Johnson, Eric T. Lofgren
JAMA Network Open  ·  18 Nov 2022  ·  doi:10.1001/jamanetworkopen.2022.40142

2021

Analysis of Vaccine Effectiveness Against COVID-19 and the Emergence of Delta and Other Variants of Concern in Utah.
Analysis of Vaccine Effectiveness Against COVID-19 and the Emergence of Delta and Other Variants of Concern in Utah.
Keegan LT, Truelove S, Lessler J
JAMA network open  ·  01 Dec 2021  ·  doi:10.1001/jamanetworkopen.2021.40906
The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout.
The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout.
Nicolò Gozzi, Paolo Bajardi, Nicola Perra
PLoS computational biology  ·  10 Sep 2021  ·  pmid:34506478
Comparison of antigen- and RT-PCR-based testing strategies for detection of SARS-CoV-2 in two high-exposure settings.
Comparison of antigen- and RT-PCR-based testing strategies for detection of SARS-CoV-2 in two high-exposure settings.
Jay Love, Megan T Wimmer, Damon J A Toth, Arthi Chandran, Dilip Makhija, Charles K Cooper, Matthew H Samore, Lindsay T Keegan
PloS one  ·  07 Sep 2021  ·  pmid:34492025
Excess Risk of COVID-19 to University Populations Resulting from In-Person Sporting Events.
Excess Risk of COVID-19 to University Populations Resulting from In-Person Sporting Events.
Johnson SS, Jackson KC, Mietchen MS, Sbai S, Schwartz EJ, Lofgren ET
International journal of environmental research and public health  ·  04 Aug 2021  ·  doi:10.3390/ijerph18168260
Coordinated Strategy for a Model-Based Decision Support Tool for Coronavirus Disease, Utah, USA.
Coordinated Strategy for a Model-Based Decision Support Tool for Coronavirus Disease, Utah, USA.
Hannah R Meredith, Emerson Arehart, Kyra H Grantz, Alexander Beams, Theresa Sheets, …, Shannon Frattaroli, Matthew H Samore, Justin Lessler, Elizabeth C Lee, Lindsay T Keegan
Emerging infectious diseases  ·  01 May 2021  ·  pmid:33900179
A scenario modeling pipeline for COVID-19 emergency planning.
A scenario modeling pipeline for COVID-19 emergency planning.
Joseph C Lemaitre, Kyra H Grantz, Joshua Kaminsky, Hannah R Meredith, Shaun A Truelove, …, Josh Wills, Kathryn Kaminsky, Javier Perez-Saez, Justin Lessler, Elizabeth C Lee
Scientific reports  ·  06 Apr 2021  ·  pmid:33824358

2020

Planning for the aftershocks: a model of post-acute care needs for hospitalized COVID-19 patients
Planning for the aftershocks: a model of post-acute care needs for hospitalized COVID-19 patients
Maloney M, Morley R, Checketts R, Weir P, Barfuss D, Meredith HR, Hofmann MG, Samore MH, Keegan LT
medRxiv  ·  13 Jun 2020  ·  doi:10.1101/2020.06.12.20129551
The Epidemiological Implications of Jails for Community, Corrections Officer, and Incarcerated Population Risks from COVID-19
The Epidemiological Implications of Jails for Community, Corrections Officer, and Incarcerated Population Risks from COVID-19
Lofgren E, Lum K, Horowitz A, Madubuonwu B, Myers K, Fefferman NH
medRxiv  ·  14 Apr 2020  ·  doi:10.1101/2020.04.08.20058842

All Publications

Publications by ForeSITE members are collected weekly from ORCID, PubMed, Europe PMC, arXiv and Crossref by InsightNet Explorer, the publication-tracking dashboard shared across the ForeSITE Network. ForeSITE member authors are shown in bold.

2026

Cost-effectiveness analysis of emicizumab use in hospitalized older individuals with acquired hemophilia A
Lim MY, Ito S, Goshua G, Chaiyakunapruk N, Yoo M, Nelson R
Blood Vessels, Thrombosis & Hemostasis  ·  01 Nov 2026  ·  doi:10.1016/j.bvth.2026.100195
Designing for Engagement: A Comparison of Canvas and a Visual Peer Review Dashboard
Alon Friedman, Md Dilshadur Rahman, Ly Dinh, Paul Rosen
ACM Transactions on Computing Education  ·  30 Sep 2026  ·  doi:10.1145/3800962
Aminopeptidase N is a receptor for hedgehog merbecoviruses.
Jin M, Jefferson VA, Zhao Z, Catanzaro NJ, De Sabato L, …, Moreno A, Baric RS, Wilen CB, Rini JM, Letko M
Nature microbiology  ·  16 Sep 2026  ·  doi:10.1038/s41564-026-02447-8
Hypertension prevalence in the Asia-Pacific region: a systematic analysis of population-based studies.
Olson PS, Lee TA, Sarker J, Sawangjit R, Tan BK, …, Fern LA, Ngo TL, Chaiyakunapruk N, Thundee C, Leelathanalerk A
Journal of pharmaceutical policy and practice  ·  14 Sep 2026  ·  doi:10.1080/20523211.2026.2727205
Outcomes after Modified Pediatric Emergency Care Applied Research Network Procalcitonin Rule Implementation in Febrile Infant Care Process Model.
Jared Olson, Frank Cipriano, Amani Jridi, Roni D Lane, Per H Gesteland, …, Carolyn Reynolds, Marilyn Valentine, R Neil Davis, Jeff Schunk, Emily A Thorell
Journal of the Pediatric Infectious Diseases Society  ·  14 Sep 2026  ·  doi:10.1093/jpids/piag087
Reducing Empiric Vancomycin Use in the Pediatric Intensive Care Unit: a Multicenter Study.
Kathleen Chiotos, Preeti Jaggi, Evan E Facer, Matthew Goldsmith, Jason Newland, …, Ebbing Lautenbach, Kai Inoki, Didien Meyahnwi, Julia E Szymczak, Jeffrey S Gerber
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  05 Sep 2026  ·  doi:10.1093/cid/ciag545
Landscape Analysis of Literature Using Quantitative Approaches to Synthesize Economic Evaluation Studies: A Scoping Review.
Veettil SK, Thomas C, En CJ, Meraz M, Dhippayom T, …, Sawangjit R, Meheus F, Mirelman A, Hutubessy R, Chaiyakunapruk N
PharmacoEconomics  ·  04 Sep 2026  ·  doi:10.1007/s40273-026-01660-x
Telehealth use among US adults with type 2 diabetes: differences in medication fill patterns and care processes.
Terrence T Liu, John Thomas Menchaca, Alexander Chaitoff, Boomer Olsen, Julia E Szymczak, Jorie Butler, Kensaku Kawamoto, Renuka Tipirneni, Molly B Conroy
Health affairs scholar  ·  03 Sep 2026  ·  doi:10.1093/haschl/qxag230
The impact of state- versus county-level mask mandates on economic activity during the COVID-19 pandemic.
Seegert N, Gaulin M, Chaiyakunapruk N, Navarro-Sanchez F, Nguyen D, Yang MJ, Nelson RE
PloS one  ·  03 Sep 2026  ·  doi:10.1371/journal.pone.0332243
Electronic Clinical Quality Measures of Antibiotic Use in Hospitalized Adults With Uncomplicated Community-Acquired Pneumonia.
White AT, Bidwell Goetz M, Jones M, Neuhauser MM, Ciarkowski C, …, Wu C, Horowitz JK, Flanders SA, Srinivasan A, Vaughn VM
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Sep 2026  ·  doi:10.1093/cid/ciag273
Estimating the National Disease Burden and Economic Burden of Respiratory Syncytial Virus (RSV) in Thailand.
Boonpattharatthiti K, Techasaensiri C, Phongsamart W, Okada PA, Patikorn C, Praphasiri P, Dhippayom T, Chaiyakunapruk N
Influenza and other respiratory viruses  ·  01 Sep 2026  ·  doi:10.1111/irv.70316
Telemedicine Use in Primary Care for Children: 2019-2024.
Alexander G Fiks, Janani Ramachandran, Samuel Wittman, Mary Kate Kelly, Kristin Davis, …, Jonathan G Yabes, Dara D Mendez, Julia E Szymczak, Robert W Grundmeier, Kristin N Ray
Pediatrics  ·  01 Sep 2026  ·  doi:10.1542/peds.2025-075498
Rethinking respiratory disease forecasting: temporal heterogeneity between surveillance predictors and outcomes drives forecast instability
Topazian HM, Sheets TR, Gruninger RJ, Kelley J, LaCross N, Samore MH, Lofgren E, Keegan LT
medRxiv  ·  22 Aug 2026  ·  doi:10.64898/2026.08.19.26360833
tabulergm: Publication-Ready Tables and Summaries for Exponential-Family Random Graph Models
George Vega Yon
CRAN: Contributed Packages  ·  21 Aug 2026  ·  doi:10.32614/cran.package.tabulergm
Defining Core Competencies and Training Priorities for Infectious Disease Dynamics as a Discipline
Keegan LT, Shoaf K
medRxiv  ·  18 Aug 2026  ·  doi:10.64898/2026.08.17.26360616
Code to plot.
Lex A, Jambor HK
Nature methods  ·  01 Aug 2026  ·  doi:10.1038/s41592-026-03173-z
Exploring TopicGPT for Identification of Themes of Emerging Pathogens in Biosurveillance Data.
Callahan A, Peterson K, Kalvesmaki A, Willson T, Dalton C, …, Ajinwo N, Humpherys J, Stevens V, Pugh MJ, Jones M
Military medicine  ·  01 Aug 2026  ·  doi:10.1093/milmed/usag213
Antimicrobial selection and multidrug resistance in four major pathogens in the US Veterans Affairs health-care system: a multicentre, retrospective, cohort study.
Thi Mui Pham, Yue Zhang, McKenna Nevers, Haojia Li, Karim Khader, Yonatan H Grad, Matthew Samore, Marc Lipsitch
The Lancet. Microbe  ·  30 Jul 2026  ·  doi:10.1016/j.lanmic.2026.101445
Investigating pathways of vancomycin-resistant Enterococcus (VRE) contamination and transmission in intensive care units: a prospective genomic surveillance study.
Tierney O’Sullivan, Windy D Tanner, William Brazelton, Karim Khader, Brian Orleans, Candace Haroldsen, Matthew H Samore, Michael Rubin, Lindsay T Keegan
medRxiv  ·  30 Jul 2026  ·  doi:10.64898/2026.07.28.26359040
Comparing the Antimicrobial Resistance Crisis to the COVID-19 Pandemic: A Randomized Public Health Messaging Experiment.
Alistair Thorpe, Rachael A Lee, Julia E Szymczak, Madeline C Farrell, Isabelle Palmer, William B Petty, Tyler Henderson, Angela Fagerlin, Valerie M Vaughn
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  23 Jul 2026  ·  doi:10.1093/cid/ciag110
Cardiovascular Outcomes of GLP-1-Based Medicines Among People With Overweight and Obesity: An Umbrella Review of Meta-Analyses of Randomized Controlled Trials.
Rashid M, Lee EL, Veettil SK, Dhippayom T, Cheng AYY, Simonetti J, Chaiyakunapruk N
Obesity reviews : an official journal of the International Association for the Study of Obesity  ·  22 Jul 2026  ·  doi:10.1111/obr.70198
US Adults' Perspectives on Antibiotic Durations and Adherence to Therapy for Common Bacterial Respiratory Infections: A National Survey.
Alistair Thorpe, Rachael A Lee, Julia E Szymczak, Madeline C Farrell, Angela Fagerlin, Valerie M Vaughn
Open forum infectious diseases  ·  21 Jul 2026  ·  doi:10.1093/ofid/ofag407
Derivation and validation of clinical prediction models for Cryptosporidium-attributed acute diarrhea in African children.
Léna Mazza, Ben J Brintz, M Jahangir Hossain, Billy Ogwel, John B Ochieng, …, Samba O Sow, Karen L Kotloff, James A Platts-Mills, Andrew T Pavia, Daniel T Leung
The Journal of infectious diseases  ·  16 Jul 2026  ·  doi:10.1093/infdis/jiag362
Parent and caregiver preferences toward antibiotic allergy delabeling in children.
Alistair Thorpe, Rachael A Lee, William B Petty, Adam L Hersh, Angela Fagerlin, Valerie M Vaughn, Julia E Szymczak
Infection control and hospital epidemiology  ·  16 Jul 2026  ·  doi:10.1017/ice.2026.10510
Hidden Burden of a Measles Outbreak Revealed by Genomic and Transmission Models.
Abbey Marye, Damon J A Toth, George Vega Yon, Jake Wagoner, Eric T Lofgren, …, Andrew T Pavia, Leisha D Nolen, Kenneth Komatsu, Kelly Oakeson, Lindsay T Keegan
medRxiv  ·  15 Jul 2026  ·  doi:10.64898/2026.07.09.26357695
Measles Hospitalizations in Utah, 2025-2026.
Anna Jones, Amelia Salmanson, Angela Weil, Danielle Timothy, Leisha D Nolen
NEJM evidence  ·  14 Jul 2026  ·  doi:10.1056/evidpha2600141
Mathematical Modeling Shows that Overall Infection Burden is Reduced More by Vaccines that Decrease Spread or Accelerate Recovery than those that Lower Severe Infections or Death.
Hewage IM, Hewage S, Schwartz EJ
Bulletin of mathematical biology  ·  04 Jul 2026  ·  doi:10.1007/s11538-026-01690-8
Provider perceptions of an antimicrobial stewardship program in immunocompromised patients at a cancer center.
Raneem H Pallotta, Julia E Szymczak, Emily S Spivak, Hannah Imlay
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  03 Jul 2026  ·  doi:10.1017/ash.2026.10756
Acute Respiratory Infections in Primary Care-Precision Microbiology Fails to Bring Order to Diagnostic Disarray.
Jeffrey A Linder, Julia E Szymczak
JAMA internal medicine  ·  01 Jul 2026  ·  doi:10.1001/jamainternmed.2026.1440
ChannelExplorer: Exploring Class Separability Through Activation Channel Visualization.
Zaman MR, Wang B, Rosen P
IEEE transactions on visualization and computer graphics  ·  01 Jul 2026  ·  doi:10.1109/tvcg.2026.3669148
Click to plot.
Jambor HK, Lex A
Nature methods  ·  01 Jul 2026  ·  doi:10.1038/s41592-026-03147-1
Estimating Changes in Facility Methicillin-Resistant Staphylococcus aureus (MRSA) Infection Rates Due to Changes in MRSA Precaution Policy.
Khader K, Haroldsen C, Stevens V, Visnovsky L, Evans M, Simbartl L, McCauley B, Samore M, Rubin M
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Jul 2026  ·  doi:10.1093/cid/ciag176
How Many Veteran COVID-19 Cases Were There during the Pandemic?
Widanagamaachchi WN, Callahan AR, Willson TM, Barbeau B, Lewis JE, Dalton CD, Stevens VW, Samore M, Chaiyakunapruk N, Jones MM
Journal of medical virology  ·  01 Jul 2026  ·  doi:10.1002/jmv.71040
How Parents Support Their Children's Boredom Relates to Dynamics of Neurophysiological Correlates of Self‐Regulation
Sammy Perone, Aryn M. Vaughan, Alana J. Anderson, Elizabeth H. Weybright
Infant and Child Development  ·  01 Jul 2026  ·  doi:10.1002/icd.70119
MAGIC: Marching Cubes Isosurface Uncertainty Visualization for Gaussian Uncertain Data With Spatial Correlation.
Athawale TM, Moreland K, Pugmire D, Johnson CR, Rosen P, Norman M, Georgiadou A, Entezari A
IEEE transactions on visualization and computer graphics  ·  01 Jul 2026  ·  doi:10.1109/tvcg.2026.3653244
The Impact of an Oncology Hospital at Home Program on Health Care Costs.
Richard E Nelson, Brock O’Neil, Anne C Kirchhoff, Jared Huber, Minkyoung Yoo, Kathi Mooney
Medical care  ·  22 Jun 2026  ·  doi:10.1097/mlr.0000000000002347
Guardrail Selection in Line Charts to Contextualize Persuasive Visualizations
K. A. Nadib, M. Kogan, A. Lex, M. Lisnic
Computer Graphics Forum  ·  17 Jun 2026  ·  doi:10.1111/cgf.70460
Reflections on Traceability for Visualization Research
J. Rogers, D. Akbaba, J. S. Brown, A. Lex, M. Meyer
Computer Graphics Forum  ·  17 Jun 2026  ·  doi:10.1111/cgf.70445
Antimicrobial stewardship: coming to a community pharmacy near you? A cross-sectional study to understand the perspectives of pharmacists, prescribers and the public.
Bradley J Langford, Shankavi Vigneswaran, Nick Daneman, Rita Ha, Certina Ho, …, Julia E Szymczak, Mina Tadrous, Kathy Tam, Daniel Warshafsky, Miranda So
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  16 Jun 2026  ·  doi:10.1017/ash.2026.10410
Clinical Impact of the BIOFIRE® FILMARRAY® Pneumonia Panel in the Veterans Affairs Healthcare System: A Difference-in-Differences Study.
Britt NS, Khader K, He T, Prinzi AM, Hommel B, Timbrook TT, Potter EM, Lodise TP
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  12 Jun 2026  ·  doi:10.1093/cid/ciag328
Molecular and ecological determinants of effective reassortment in orthohantaviruses
Rivero R, Simons D, Damodaran L, Karegi I, Gurev S, Becker DJ, Warren DL, Mueller NF, Rasmussen DA, Seifert SN
bioRxiv  ·  12 Jun 2026  ·  doi:10.64898/2026.06.10.731004
Evaluating Encodings for Bivariate Edges in Adjacency Matrices
J. Acosta‐Hernández, A. Lex, T. He
Computer Graphics Forum  ·  11 Jun 2026  ·  doi:10.1111/cgf.70475
Calculating the Probability that a Previously Susceptible Individual is Infected as a Function of Time Following Exposure to SARS-CoV-2.
Thomas A, Khader K, Hersh A, Samore M
Infectious diseases and therapy  ·  05 Jun 2026  ·  doi:10.1007/s40121-026-01371-y
A Qualitative Evaluation of Community Colleges as a Pathway to the Certified in Disease Intervention Credential.
Kristina S Gale, Jennifer Dailey-Provost, Mindy Bateman, Judith Hilman, Kimberley Shoaf, Lisa H Gren
Public health reports (Washington, D.C. : 1974)  ·  04 Jun 2026  ·  doi:10.1177/00333549261446270
Designing Annotations in Visualization: Considerations from Visualization Practitioners and Educators
Md Dilshadur Rahman, Devin Lange, Ghulam Jilani Quadri, Paul Rosen
Computer Graphics Forum  ·  04 Jun 2026  ·  doi:10.1111/cgf.70435
Estimating the distributional impact of improving access to snake antivenom in urban and rural Lao People's Democratic Republic: An extended cost-effectiveness analysis.
Patikorn C, Khuharatanachai T, Cho JY, Taychakhoonavudh S, Mayxay M, Senbounsou K, Blessmann J, Chaiyakunapruk N
PLoS neglected tropical diseases  ·  04 Jun 2026  ·  doi:10.1371/journal.pntd.0014420
Viral reservoir status in small mammals emerges as a predictable life-history trait after correcting for surveillance bias
Simons D, Rivero R, Rickard G, Martinez-Checa A, Gordon H, Redding DW, Seifert SN
bioRxiv  ·  04 Jun 2026  ·  doi:10.64898/2026.06.03.729761
Cost-Effectiveness Analysis of Patient Self-Management of Warfarin Among Patients With Non-Valvular Atrial Fibrillation.
Kategeaw W, Witt DM, King JB, Malone DC, Chaiyakunapruk N
Pharmacotherapy  ·  01 Jun 2026  ·  doi:10.1002/phar.70154
Should Human Capital Development Programs be Mandatory or Voluntary? Evidence from a Field Experiment on Mentorship
Jason Sandvik, Richard Saouma, Nathan Seegert, Christopher Stanton
Management Science  ·  01 Jun 2026  ·  doi:10.1287/mnsc.2024.07524
Why epidemic risk at the 2026 World Cup may not be what you think
Lessler J, Smith CP, Das P, Sykes AL, Urbinati A, …, Kern-Allely SC, Vega Yon GG, Lofgren ET, Pearson CA, Vespignani A
medRxiv  ·  01 Jun 2026  ·  doi:10.64898/2026.05.28.26354384
Estimated Medicare Part D Ocular Drug Savings with a Direct-to-Consumer Pharmacy.
Max Liu, Minkyoung Yoo, Charissa H Tan, Lieu N Lowrie, Zoha N Mian, Vamsee K Vemulapalli, Richard E Nelson, Liliana Werner, Nick Mamalis
Ophthalmology  ·  27 May 2026  ·  doi:10.1016/j.ophtha.2026.05.030
A qualitative study to inform the design and implementation of AI-driven diagnosis: Challenges, barriers, and clinical insights of physicians.
Chitrapady S, Poojari PG, Rashid M, Kunhikatta V, Varma D M, …, K N S, Devi V, Acharya U D, Khan S, Thunga G
PloS one  ·  22 May 2026  ·  doi:10.1371/journal.pone.0348519
Mobile Health Tools to Support Antimicrobial Prescribing: An Integrative Review of Digital Applications
Adalin Mariya Simon, Irshad Pasha, Thekkumcheril Sidhick Sulfath, Ambalappotta Hafis, Nihala Jabeen, Christy Thomas, Ruksana Begum, Manik Chhabra, Mohamed Hisham, Muhammed Rashid
Current Infectious Disease Reports  ·  22 May 2026  ·  doi:10.1007/s11908-026-00882-6
Derivation and validation of clinical prediction models for viral etiologies of acute diarrhea in North American children presenting for emergency care.
Paola Fonseca-Romero, Timothy Smith, Sharia M Ahmed, Anna Jones, Natalya Alekhina, …, Amy L Leber, Rangaraj Selvarangan, Stephen Freedman, Andrew T Pavia, Daniel T Leung
medRxiv  ·  18 May 2026  ·  doi:10.64898/2026.05.14.26353143
Intramuscular Immunoglobulin for Measles Postexposure Prophylaxis.
Angela Weil, Anna Jones, Kelly Mansfield, Andrew T Pavia, Angie White, Leisha D Nolen
NEJM evidence  ·  13 May 2026  ·  doi:10.1056/evidpha2600093
Health, economic, and equity impact of a COVID-19 mobile vaccine clinic program in US: a cost-effectiveness analysis.
Khanh N C Duong, Damon J A Toth, Danielle T Nguyen, Yue Zhang, Richard E Nelson, …, Makoto M Jones, Carl Asche, Daniel C Malone, Matthew H Samore, Nathorn Chaiyakunapruk
Lancet regional health. Americas  ·  05 May 2026  ·  doi:10.1016/j.lana.2026.101488
SARS-CoV-2 surveillance and vaccine effectiveness among dental healthcare workers during the omicron surge.
Holly Shoemaker, Jeri L Bullock, Kristina Stratford, Melodie L Weller, Wendy L Hobson, Jeanmarie Mayer, Yue Zhang, Vanessa Stevens, Stacey E Swilling, Matthew Samore
Scientific reports  ·  05 May 2026  ·  doi:10.1038/s41598-026-50216-8
Haemoglobin A1c Time-In-Range and Mortality in Adults With Diabetes.
Paul R Conlin, Julia C Prentice, David C Mohr, Libin Zhang, Donglin Li, Erin Pleasants, Richard E Nelson, Suma Vupputuri, Gregory A Nichols
Endocrinology, diabetes & metabolism  ·  01 May 2026  ·  doi:10.1002/edm2.70197
Primary Care Telemedicine vs In-Person Antibiotic Prescribing for Pediatric Respiratory Tract Infections.
Kristin N Ray, Samuel R Wittman, Mary Kate Kelly, Janani Ramachandran, Kristin Davis, …, Julia E Szymczak, Dara D Méndez, Jonathan G Yabes, Robert Grundmeier, Alexander G Fiks
JAMA network open  ·  01 May 2026  ·  doi:10.1001/jamanetworkopen.2026.10062
Association between Weather Variables and Viral Gastroenteritis in the United States.
Natalya Alekhina, Paola Fonseca-Romero, Per H Gesteland, Ben J Brintz, Amy L Leber, …, Kimberle C Chapin, Rangaraj Selvarangan, Sean Soisson, Andrew T Pavia, Daniel T Leung
medRxiv  ·  30 Apr 2026  ·  doi:10.64898/2026.04.29.26352095
Burden of laboratory-confirmed RSV hospitalization in children <5 years-of-age; 2019-2022.
Krow Ampofo, Evan Heller, Alexander Platt-Koch, Per Gesteland, Kaleb Miller, Abbey Loveridge, Lazarus Adua, Yue Zhang, Madelyn Ruggieri, Yoonyoung Choi
BMC pediatrics  ·  30 Apr 2026  ·  doi:10.1186/s12887-026-06871-x
Cost-effectiveness analysis of atezolizumab and bevacizumab as first-line systemic therapy in unresectable hepatocellular carcinoma in Malaysia.
Wong YF, Mohamed R, Sulaiman Shah AA, Chaiyakunapruk N, Patikorn C
Journal of medical economics  ·  25 Apr 2026  ·  doi:10.1080/13696998.2026.2658448
Using Serosurveys to Optimize Surveillance for Zoonotic Pathogens.
Clancey E, Nuismer SL, Seifert SN
EcoHealth  ·  25 Apr 2026  ·  doi:10.1007/s10393-026-01789-3
How users perceive meta-analysis of economic evaluations.
Veettil SK, Mahmood A, Meraz M, Youngkong S, Dhippayom T, Chaiyakunapruk N
International journal of technology assessment in health care  ·  22 Apr 2026  ·  doi:10.1017/s0266462326103742
Return on investment of community health workers in the United States: a systematic review.
Rashid M, Fu M, Jitareewong P, Cho JY, Nelson RE, Ceballos RM, Saokaew S, Chaiyakunapruk N
Lancet regional health. Americas  ·  21 Apr 2026  ·  doi:10.1016/j.lana.2026.101469
Roads, Soil, Snow, and Topography Influence Genetic Connectivity: A Machine Learning Approach for a Peripheral American Badger Population.
Palm EC, Landguth EL, Lamy K, Gorrell JC, Weir RD, Richardson EL, Forbes KJ, Davis H, Burgar JM
Ecology and evolution  ·  16 Apr 2026  ·  doi:10.1002/ece3.73467
Clostridioides difficile colonization amplification despite limited in-hospital transmission: A modeling study.
De-la-Rosa-Martinez D, Porco TC, Hazel A, Liu X, Khader K, Blumberg S
PLoS medicine  ·  13 Apr 2026  ·  doi:10.1371/journal.pmed.1004712
Implementation of a pediatric antibiotic stewardship intervention across a large integrated health system: protocol to optimize antibiotic selection and prescription duration for acute respiratory tract infections in children.
Timothy R Fowles, Payal K Patel, Allan M Seibert, Adam L Hersh, Tom Belnap, Bridgett Hanna, Julia E Szymczak, Heather T Keenan, Bradley J Barney, Rajendu Srivastava
Implementation science communications  ·  09 Apr 2026  ·  doi:10.1186/s43058-026-00915-0
Association Between Peer Comparison Feedback and Hospitalist Antibiotic Prescribing.
Lucy S Witt, Radhika Prakash-Asrani, K Ashley Jones, C Christina Mehta, Zanthia Wiley, …, Jessica Howard-Anderson, Sujit Suchindran, Julia E Szymczak, Raymund B Dantes, Scott K Fridkin
JAMA network open  ·  01 Apr 2026  ·  doi:10.1001/jamanetworkopen.2026.9504
Expanding Access to Methadone Treatment for Opioid Use Disorder: Measurement and Policy Considerations for the Veterans Health Administration.
Vanneman ME, Rahim FG, Amuan ME, Nelson RE, Gordon AJ, Jones AL
Health services research  ·  01 Apr 2026  ·  doi:10.1111/1475-6773.70114
Effectiveness of mobile vaccine clinics on COVID-19 vaccination uptake in the USA: an observational study.
Khanh N C Duong, Yue Zhang, Richard E Nelson, Andrew T Pavia, Barbara E Jones, Danielle T Nguyen, Cindy Wynette, Makoto M Jones, Matthew H Samore, Nathorn Chaiyakunapruk
BMJ public health  ·  30 Mar 2026  ·  doi:10.1136/bmjph-2025-003369
Vaccines for healthcare personnel: a core safety measure a position statement from the Society for Healthcare Epidemiology of America (SHEA).
David J Weber, Grace M Lee, Erica S Shenoy, Deborah S Yokoe, Rajalakshmi Ananthanarayanan, …, Ann-Christine Nyquist, Catherine Passaretti, Lisa Saiman, Julia E Szymczak, Thomas R Talbot
Infection control and hospital epidemiology  ·  26 Mar 2026  ·  doi:10.1017/ice.2026.10405
Comparing two strategies to support the implementation of evidence-based practices for substance use disorders in VA's permanent supportive housing program: a protocol for a type 3 hybrid cluster-randomized controlled trial.
Sonya Gabrielian, Evelyn T Chang, Emily B H Treichler, Jenny Barnard, Richard E Nelson, Michelle S Wong, Nicholas J Jackson, Erin P Finley
Implementation science : IS  ·  24 Mar 2026  ·  doi:10.1186/s13012-026-01498-z
GLP-1 Receptor/Dual Agonists for Weight Loss: A Systematic Review and Network Meta-Analysis of RCTs.
Vienghirun J, Sawangjit R, Suttiruksa S, Chaiyakunapruk N, Jinathongthai P, Khunti K, Lee SWH
Diabetes, obesity & metabolism  ·  23 Mar 2026  ·  doi:10.1111/dom.70698
Hospital Costs Associated With Mechanical Left Ventricular Unloading Devices During VA ECMO for Adult Cardiogenic Shock.
Hockstein MA, Horns JJ, Hanff T, Taleb I, Selzman C, Drakos S, Nelson R, Tonna JE
Artificial organs  ·  18 Mar 2026  ·  doi:10.1111/aor.70117
Birthplace Implications of COVID-19 Mortality in Utah 2020-2023: A Cross-sectional Study.
Daniel Knox, Natalia Arizmendez, Megan Cahn, Chun-Pin Esther Chang, Zhe David Yu, Kimberley Shoaf, Sharon Talboys, Mia Hashibe
Journal of immigrant and minority health  ·  16 Mar 2026  ·  doi:10.1007/s10903-026-01890-3
COVID-19 Vaccination Is Not Associated With the Development of Idiopathic Inflammatory Myositis in US Veterans.
Hernández C, Schlesinger N, Rojas J, Walsh JA, Braaten TJ, …, Jones M, Sauer BC, Facelli J, Cannon GW, Lebiedz-Odrobina D
Arthritis care & research  ·  13 Mar 2026  ·  doi:10.1002/acr.70023
Outpatient antibiotic prescribing among Utah Medicaid recipients: A 4-year population-based analysis.
Tariq Mosleh, Angela Weil, Devin Beard, April Clements, Christina Radloff, Leisha D Nolen, Karim Khader, Elle Stevenson, Susan Cheever, Sarah Rigby
American journal of infection control  ·  12 Mar 2026  ·  doi:10.1016/j.ajic.2026.03.005
Comparative susceptibility of Old World and New World bat cell lines to Zika virus: Insights into viral replication and inflammatory responses.
Brown AJ, Fagre AC, Gilson J, Horton J, Allen JN, Rivero R, Karimi M, Speranza E, Letko M, Seifert SN
PLoS neglected tropical diseases  ·  06 Mar 2026  ·  doi:10.1371/journal.pntd.0014065
imaginarycss: Tools for Studying Imaginary Cognitive Social Structure
Sima Najafzadehkhoei, George Vega Yon, Kyosuke Tanaka
CRAN: Contributed Packages  ·  04 Mar 2026  ·  doi:10.32614/cran.package.imaginarycss
Shiga Toxin-Producing Escherichia coli Outbreak in Canadian Daycare Centers.
Mohamed Eltorki, Oluwatimilehin O Ajayi, Jina Seok, Jianling Xie, Francesco A Rizzuti, …, Otto G Vanderkooi, Linda Chui, Gillian A M Tarr, Gemma Vomiero, Stephen B Freedman
JAMA network open  ·  02 Mar 2026  ·  doi:10.1001/jamanetworkopen.2026.1278
Climate Extremes, Genomic Coverage, and Taxonomy Shape the Detection of Adaptation: A Systematic Review of GEA Studies for the Kingdom Animalia.
Williams AK, Ruppert OM, Landguth EL
Molecular ecology  ·  01 Mar 2026  ·  doi:10.1111/mec.70328
Differential Impact of the Supportive Services for Veteran Families (SSVF) Program on Veterans Affairs Healthcare Utilization and Costs Among Rural and Urban Veterans Experiencing Housing Instability.
Minkyoung Yoo, Alec B Chapman, Ying Suo, Thomas Byrne, Ann E Montgomery, Richard E Nelson
The Journal of rural health : official journal of the American Rural Health Association and the National Rural Health Care Association  ·  01 Mar 2026  ·  doi:10.1111/jrh.70167
Using Generative Artificial Intelligence for Healthcare-Associated Infection Surveillance.
Morgan DJ, Goodman KE, Branch-Elliman W, Shenoy ES, Salinas JL, …, Schrank GM, Pineles L, AlShanqeeti S, Harris AD, Klein E
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Mar 2026  ·  doi:10.1093/cid/ciaf619
Copper (Cu) for Reducing Environmental Healthcare Associated Infections (CuRE HAI): A 10-year pragmatic copper surface implementation study.
Marjory D Williams, Angelia Bridges, John D Coppin, Piyali Chatterjee, Hosoon Choi, …, Morgan Bennett, Richard E Nelson, Emma Brackens, Lynn Mayo, Chetan Jinadatha
American journal of infection control  ·  28 Feb 2026  ·  doi:10.1016/j.ajic.2026.02.239
Practical Guidelines and Reflections on Building Public Health Software: A Measles Case Study (Preprint)
George G Vega Yon, Delaney Thornton, Andrew Redd, Andrew Pulsipher, Damon Toth, …, Kaitlyn Johnson, Laura F White, Randon Gruninger, Leisha D Nolen, Matthew H Samore
Preprint  ·  27 Feb 2026  ·  doi:10.2196/preprints.94240
Bayesian generative modeling for heterogeneous wastewater data applied to COVID-19 forecasting
Johnson KE, Vega Yon G, Brand SP, Zelaya COB, Bayer D, …, Hamlet A, Olesen SW, Pulliam JR, Abbott S, Morris DH
medRxiv  ·  24 Feb 2026  ·  doi:10.64898/2026.02.23.26346887
Effects of Project Type on CS Capstone Courses
Ananth A. Jillepalli, David Rice, James Crabb, Assefaw H. Gebremedhin
Proceedings of the 57th ACM Technical Symposium on Computer Science Education V.1  ·  18 Feb 2026  ·  doi:10.1145/3770762.3772578
Examining the Impact of Instructor-Client Mentoring Models in CS Capstone Courses at a Public University
Ananth A. Jillepalli, James Crabb, David Rice, Assefaw H. Gebremedhin
Proceedings of the 57th ACM Technical Symposium on Computer Science Education V.1  ·  18 Feb 2026  ·  doi:10.1145/3770762.3772577
Quantifying the population-level impact of expanded antibiotic treatment for cholera outbreak management.
Ahmed SM, LaPrete CR, Ciglenecki I, Azman A, Leung DT, Keegan LT
PLoS computational biology  ·  18 Feb 2026  ·  doi:10.1371/journal.pcbi.1013980
epiworldRcalibrate: Fast and Effortless Calibration of Agent-Based Models using Machine Learning
Sima Najafzadehkhoei, George Vega Yon, Jake Wagoner, Bernardo Modenesi
CRAN: Contributed Packages  ·  18 Feb 2026  ·  doi:10.32614/cran.package.epiworldrcalibrate
measles: Measles Epidemiological Models
George Vega Yon
CRAN: Contributed Packages  ·  12 Feb 2026  ·  doi:10.32614/cran.package.measles
Projected impact of a pathogen reduction intervention on carbapenem-resistant Enterobacterales bloodstream infections and deaths in the United States.
Wolford H, Khan MA, Paul P, Toth DJA, Octaria R, …, McDonald LC, Craig M, Srinivasan A, Walters MS, Slayton RB
Infection control and hospital epidemiology  ·  10 Feb 2026  ·  doi:10.1017/ice.2025.10335
multigroup.vaccine: Analyze Outbreak Models of Multi-Group Populations with Vaccination
Damon Toth, Jake Wagoner, Willy Ray
CRAN: Contributed Packages  ·  09 Feb 2026  ·  doi:10.32614/cran.package.multigroup.vaccine
Physician Variation in Early Sepsis Management.
Ithan D Peltan, Danielle Groat, Jorie Butler, Joseph R Bledsoe, Blessing S Ofori-Atta, …, Fiona M Schroeder, M Blakely May, Matthew H Samore, Catherine L Hough, Samuel M Brown
JAMA network open  ·  02 Feb 2026  ·  doi:10.1001/jamanetworkopen.2025.56945
Visual Stenography: Feature Recreation and Preservation in Sketches of Noisy Line Charts.
Proma RA, Correll M, Quadri GJ, Rosen P
IEEE transactions on visualization and computer graphics  ·  01 Feb 2026  ·  doi:10.1109/tvcg.2025.3626128
A vision for estimation of the instantaneous reproductive number.
Milando CW, Yon GGV, Johnson K, Urbinati A, St-Onge G, Klein B, Cori A, White LF, Collabathon participants
Epidemics  ·  29 Jan 2026  ·  doi:10.1016/j.epidem.2026.100885
Interepidemic Rift Valley fever in East Africa: the recent risk landscape and projected impacts of global change.
Eskew EA, Clancey E, Singh D, Situma S, Nyakarahuka L, Njenga MK, Nuismer SL
Proceedings. Biological sciences  ·  28 Jan 2026  ·  doi:10.1098/rspb.2025.2193
Machine Learning in Drug Repurposing
Gouri Nair, Muhammed Rashid, Najaf Farooqui, K Spandana, Ummai Salma, B. A. Bharathi, Christy Thomas, Ruksana Begum, G. N. S. Hema Sree
Advances in Computational Intelligence and Robotics  ·  22 Jan 2026  ·  doi:10.4018/979-8-3373-6400-1.ch010
Cost-effectiveness analysis of a text message system for COVID-19 testing for K-12 school communities.
Maura Dougherty, Yelena P Wu, Leighann Kolp, Hannah L Brady, Tammy K Stump, …, Kelly J Lundberg, Brian Orleans, Jennifer Wirth, David W Wetter, Richard E Nelson
Journal of the Pediatric Infectious Diseases Society  ·  17 Jan 2026  ·  doi:10.1093/jpids/piaf111
Hyperendemicity of Rift Valley Fever in Southwestern Uganda Associated With the Rapidly Evolving Lineage C Viruses.
Bakamutumaho B, Juma J, Clancey E, Nyakarahuka L, Situma S, …, Bosa HK, Nuismer SL, Oyola SO, Breiman RF, Njenga MK
The Journal of infectious diseases  ·  17 Jan 2026  ·  doi:10.1093/infdis/jiaf417
COVID-19 outcomes among individuals with substance use disorders.
Chun-Pin Esther Chang, Daniel Knox, Zhe David Yu, Kimberley Shoaf, Sharon L Talboys, Mia Hashibe
Public health  ·  16 Jan 2026  ·  doi:10.1016/j.puhe.2026.106156
ReVISit 2: A Full Experiment Life Cycle User Study Framework
Cutler Z, Wilburn J, Shrestha H, Ding Y, Bollen B, Nadib KA, He T, McNutt A, Harrison L, Lex A
IEEE Transactions on Visualization and Computer Graphics  ·  16 Jan 2026  ·  doi:10.1109/tvcg.2025.3633896
Cost-Effectiveness Analysis of Artificial Intelligence-Driven Risk Stratification in Patients With Diabetic Kidney Disease in the US Veterans Population.
Jyotirmoy Sarker, Abdullah I Abdelaziz, Jacob Crook, Richard E Nelson, Joanne LaFleur, Heather Nyman, Chao-Chin Lu, Kibum Kim
Kidney medicine  ·  12 Jan 2026  ·  doi:10.1016/j.xkme.2026.101261
P-1104. Multidrug-Resistant Organism (MDRO)-Contaminated Mobile Equipment Networks in Skilled Nursing Facilities
Lindsay D Visnovsky, Molly Leecaster, George G Vega Yon, Catherine M Loc-Carrillo, Egenia Dorsan, Tavis Huber, Styn M Jamu, Kristina Stratford, Matthew H Samore, Frank A Drews
Open Forum Infectious Diseases  ·  11 Jan 2026  ·  doi:10.1093/ofid/ofaf695.1299
Clostridioides difficile clinical diagnostic test methods and results are associated with recovery of C. difficile by stool culture.
Andrew M Skinner, Alice Y Guh, Laurica A Petrella, Susan Sambol, Adam Cheknis, …, Ashley L Paulick, Matthew H Samore, Michelle Adamczyk, Amy S Gargis, Dale N Gerding
Microbiology spectrum  ·  09 Jan 2026  ·  doi:10.1128/spectrum.03408-25
Health Care Outcomes of Homelessness Prevention Programs in Veterans Experiencing Housing Instability.
Richard E Nelson, Alec B Chapman, Ann Elizabeth Montgomery, Ying Suo, Atim Effiong, …, Tom Greene, Jack Tsai, Lillian Gelberg, Stefan G Kertesz, Thomas Byrne
JAMA health forum  ·  02 Jan 2026  ·  doi:10.1001/jamahealthforum.2025.6417
Improving Discharge Antibiotic Use via Prospective Audit and Feedback-The Importance of Contextual Variation.
Julia E Szymczak, Valerie M Vaughn, Adam L Hersh
JAMA network open  ·  02 Jan 2026  ·  doi:10.1001/jamanetworkopen.2025.49620
Communication and Coordination in a VA Rapid Rehousing and Homelessness Prevention Program: A Qualitative Study.
Tania Velasquez, Ann Elizabeth Montgomery, Thomas Byrne, Warren Pettey, Ly Do, …, Kennedi Bloomquist, Ying Suo, Atim Effiong, Richard E Nelson, Susan Zickmund
Cityscape (Washington, D.C.)  ·  01 Jan 2026  ·  pmid:42569579
Low dose corticosteroid for a longer duration at an early phase: A potentially optimal dosage regimen for the management of ARDS
Muhammed Rashid, Sreedharan Nair, Pooja Gopal Poojari, Vishal Shanbhag, Raviraja V. Acharya, Sohil Khan, Girish Thunga
Clinical Epidemiology and Global Health  ·  01 Jan 2026  ·  doi:10.1016/j.cegh.2025.102282
Simulating the Landscape Eco-evolution of Host-pathogen Systems with CDMetaPOP
Erin Landguth, Allison Williams, Marissa Roseman, Miracle Amadi, Baylor Fain, …, Byron Weckworth, Julie Weckworth, Flora Whiting-Fawcett, Duncan Wilson, Casey C. Day
Preprint  ·  01 Jan 2026  ·  doi:10.2139/ssrn.6429806

2025

Systematic Review and Meta-Analysis of Lurasidone for the Treatment of Schizophrenia Focusing on Endpoints Related to Treatment Goals
The Pharmaceutical Society Of Korea, Siin Kim Siin Kim, Miryoung Kim Miryoung Kim, Haeseon Lee Haeseon Lee, Kyung Eun Lee Kyung Eun Lee, Hae Sun Suh Hae Sun Suh
Yakhak Hoeji  ·  30 Dec 2025  ·  doi:10.17480/psk.2025.69.6.529
A Qualitative Study of Collegiate Student-Athlete Experiences of Recovery After Concussion.
Bernadette A D’Alonzo, Andrea L C Schneider, Anthony Erz, Christina L Master, Ian J Barnett, Roy H Hamilton, Douglas J Wiebe, Julia E Szymczak
The Journal of head trauma rehabilitation  ·  29 Dec 2025  ·  doi:10.1097/htr.0000000000001067
Society for Healthcare Epidemiology of America supports environmental stewardship and sustainability while protecting patients and healthcare personnel position statement of the SHEA Board.
David J Weber, Priya Nori, Rajalakshmi Ananthanarayanan, Carolee Estelle, Jesse T Jacob, …, Catherine Passaretti, Lisa Saiman, Erica S Shenoy, Julia E Szymczak, Thomas R Talbot
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  26 Dec 2025  ·  doi:10.1017/ash.2025.10262
The influence of social relationships on clinician interpretation of performance data in an outpatient antibiotic stewardship intervention.
Julia E Szymczak, Lindsay W Glassman, Brandi M Muller, Ebbing Lautenbach, Keith W Hamilton, Lauren Dutcher, CDC Prevention Epicenters Program
Antimicrobial resistance and infection control  ·  24 Dec 2025  ·  doi:10.1186/s13756-025-01686-4
Evaluating the Optimal Treatment Pathway for Volar Wrist Ganglia: A Cost-Minimization Analysis.
Miranda J Rogers, Hernan Roca, Minkyoung Yoo, Gretchen Maughan, Richard E Nelson, Andrew Federer, Nikolas H Kazmers
Plastic and reconstructive surgery  ·  22 Dec 2025  ·  doi:10.1097/prs.0000000000012757
Cost-effectiveness of chimeric antigen receptor T-cell therapy for relapsed or refractory large B-cell lymphoma: a systematic review and meta-analysis.
Loftus TJ, Cho JY, Meraz M, Dhippayom T, Bock AM, Wagner CB, Thavorn K, Chaiyakunapruk N
Journal of medical economics  ·  17 Dec 2025  ·  doi:10.1080/13696998.2025.2600217
Impact of an Educational Leaflet About Asymptomatic Bacteriuria and Urinary Tract Infection on Antibiotic Preferences Among US Adults ≥65 Years: An Online Randomized Controlled Survey Experiment.
Alistair Thorpe, Rachael A Lee, Julia E Szymczak, Madeline C Farrell, Karen Howard, Brandi M Muller, Andrea T White, Angela Fagerlin, Valerie M Vaughn
Open forum infectious diseases  ·  15 Dec 2025  ·  doi:10.1093/ofid/ofaf690
Injection-site and dermatologic reactions associated with glucagon-like peptide-1 receptor agonists: Insights from meta-analysis of randomised controlled trials and real-world evidence.
Taj S, Zuber M, Rashid M, Chhabra M, Undela K, Rawal S, Villa Zapata L
Diabetes, obesity & metabolism  ·  15 Dec 2025  ·  doi:10.1111/dom.70382
GLP-1 receptor agonists for treating obesity without diabetes: A systematic review and meta-analysis of economic evaluations.
Dhippayom T, Meraz M, Lee H, Hur C, Inadomi JM, Veettil SK, Dunn JD, Chaiyakunapruk N
Diabetes, obesity & metabolism  ·  09 Dec 2025  ·  doi:10.1111/dom.70322
Tick-Borne Diseases in Urban and Periurban Areas: A Blind Spot in Research and Public Health.
Maria A Diuk-Wasser, Pilar Fernandez, Sophie O Vanwambeke
Annual review of entomology  ·  02 Dec 2025  ·  doi:10.1146/annurev-ento-121423-013702
A Survey on Annotations in Information Visualization: Empirical Studies, Applications and Challenges.
Rahman MD, Doppalapudi B, Quadri GJ, Rosen P
IEEE transactions on visualization and computer graphics  ·  01 Dec 2025  ·  doi:10.1109/tvcg.2025.3600957
Land use and soil characteristics are associated with increased risk of treponeme‐associated hoof disease in elk
Steven N. Winter, Glen A. Sargeant, Margaret A. Wild, Erin Clancey, Kathryn P. Huyvaert, Kyle Garrison, Pilar Fernandez
Ecosphere  ·  01 Dec 2025  ·  doi:10.1002/ecs2.70470
Infection prevention behaviors and perceptions of nurses in a medical intensive care unit.
Frank A Drews, Jeanmarie Mayer, Molly Leecaster, Lindsay Visonvsky, Tavis Huber, Matthew H Samore
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  24 Nov 2025  ·  doi:10.1017/ash.2025.10231
Evaluation of tenofovir alafenamide- versus tenofovir disoproxil fumarate-containing regimens on renal outcomes: systematic literature review and meta-analysis.
Liang X, Park KY, Lee H, Liu H, Willis C, …, Rogers R, Weinberg AR, Green J, Chi A, Chaiyakunapruk N
BMC nephrology  ·  21 Nov 2025  ·  doi:10.1186/s12882-025-04628-9
Interventions to optimize duration of antibiotic therapy and encourage oral transition for uncomplicated gram-negative blood stream infections across a health system.
Jared Olson, Adam Hersh, John Veillette, C Dustin Waters, Brandon J Webb, …, Edward Stenehjem, Andrew Pavia, Payal Patel, Allan Seibert, Whitney Buckel
Infection control and hospital epidemiology  ·  20 Nov 2025  ·  doi:10.1017/ice.2025.10359
Poster: Adversarial Habituation Attack: A Psychological Extension and Re-framing of Boiling Frog Attack
Tashi Stirewalt, Assefaw Gebremedhin
Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security  ·  19 Nov 2025  ·  doi:10.1145/3719027.3760741
College Students’ Healthy Leisure: Latent Profile Analyses of Constraints and Negotiation Strategies
Jennifer P. Agans, Julie Stafford Son, Sammie Powers, Steven Hanna, Elizabeth H. Weybright
Leisure Sciences  ·  17 Nov 2025  ·  doi:10.1080/01490400.2023.2252434
Hemoglobin A1c time-in-range, mortality, and diabetes complications in older adults with diabetes.
Paul R Conlin, Julia C Prentice, David C Mohr, Libin Zhang, Donglin Li, Erin Pleasants, Richard E Nelson, Suma Vupputuri, Gregory A Nichols
BMJ open diabetes research & care  ·  04 Nov 2025  ·  doi:10.1136/bmjdrc-2025-005188
Buprenorphine Treatment for Opioid Use Disorder in Non-Addiction Specialty Settings.
Sophia Huebler, Audrey L Jones, Hongwei Zhao, Richard E Nelson, Hildi J Hagedorn, Eric J Hawkins, Adam J Gordon
JAMA network open  ·  03 Nov 2025  ·  doi:10.1001/jamanetworkopen.2025.43543
STAAR-FM: Scalable Terrain-Aware Adaptive Resolution Framework for Flow Modeling
Deven Biehler, Tashi Stirewalt, Zayn Abou-Harb, Assefaw Gebremedhin
Proceedings of the 8th ACM SIGSPATIAL International Workshop on Geospatial Simulation  ·  03 Nov 2025  ·  doi:10.1145/3764921.3770149
Parent and Clinician Perceptions of Suctioning in Hospitalized Children With Bronchiolitis.
Robert J Willer, Hadley M Brighton, Polina Frolova Gregory, Michelle Y Hamline, Jimin Lee, Julia E Szymczak, Maya Wheeler, Lauren M McDaniel
Hospital pediatrics  ·  01 Nov 2025  ·  doi:10.1542/hpeds.2025-008503
Caregiver psychological burden of RSV Hospitalization of children 2 years of age and under.
Lazarus Adua, Krow Ampofo, Evan Heller, Per Gesteland, Abbey Loveridge, …, Kaleb Miller, Alex Platt-Koch, Madelyn Ruggieri, Lyn Finelli, Yoonyoung Choi
PloS one  ·  30 Oct 2025  ·  doi:10.1371/journal.pone.0334405
Effectiveness and safety of turmeric for the treatment of COVID-19: An updated systematic review and meta-analysis of randomized controlled trials.
Sawangjit R, Sadoyu S, Manosanthipaibul S, Teerawattanapong N, Puttarak P, Wanaratna K, Charoensup R, Hiransai P, Meetam T, Chaiyakunapruk N
Complementary therapies in medicine  ·  30 Oct 2025  ·  doi:10.1016/j.ctim.2025.103295
Validation of an electronic algorithm to identify appropriate antibiotic use for community-acquired pneumonia in hospitalized children.
Kathleen Chiotos, Lauren Dutcher, Robert Grundmeier, Didien Meyahnwi, Ebbing Lautenbach, …, Julia E Szymczak, Brandi Muller, Leigh Cressman, Anne Jaskowiak-Barr, Jeffrey Gerber
Infection control and hospital epidemiology  ·  28 Oct 2025  ·  doi:10.1017/ice.2025.10314
Charges associated with preventable trauma transfers after application of pediatric brain injury guidelines (kBIG).
Anastasia M Kahan, Annika B Kay, Sommer L Glasgow, Hsuan-Yu Wan, Sidney Norton, Richard E Nelson, Vijay M Ravindra, Robert A Swendiman, Zachary J Kastenberg, Katie W Russell
Journal of pediatric surgery  ·  25 Oct 2025  ·  doi:10.1016/j.jpedsurg.2025.162763
Impact of local COVID-19 incidence on health care personnel risk perception and social activity.
Holly Shoemaker, Haojia Li, Yue Zhang, Jeanmarie Mayer, Vanessa Stevens, …, Morgan M Millar, Andrew T Pavia, Per H Gesteland, Lindsay T Keegan, Matthew Samore
American journal of infection control  ·  25 Oct 2025  ·  doi:10.1016/j.ajic.2025.10.013
Testing the Daily Bidirectional Relationships Between Stress and Sleep Using Bivariate Multilevel Autoregressive Modeling.
Nicholls C, Shoaf K, Halliday T, Prather AA, Baucom BRW, Baron KG
Biopsychosocial science and medicine  ·  20 Oct 2025  ·  doi:10.1097/psy.0000000000001446
Improving Access to Influenza Testing and Treatment: Is It Time for Over-the-counter Oseltamivir?
Kyueun Lee, Andrew T Pavia, Janet A Englund
The Journal of infectious diseases  ·  17 Oct 2025  ·  doi:10.1093/infdis/jiaf152
Transmission thresholds for the spread of infections in healthcare facilities.
Damon J A Toth, Karim Khader, Christopher Mitchell, Matthew H Samore
PLoS computational biology  ·  15 Oct 2025  ·  doi:10.1371/journal.pcbi.1013577
A novel approach for classifying monoamine neurotransmitters by applying machine learning on UV plasmonic-engineered auto fluorescence time decay series (AFTDS).
Mohammadi M, Najafzadehkhoei S, Vega Yon GG, Wang Y
Nanoscale advances  ·  14 Oct 2025  ·  doi:10.1039/d5na00416k
The incremental net monetary benefit of higher-valent pneumococcal conjugate vaccines for adults: a systematic review and meta-analysis of economic evaluations.
Lee H, Cho JY, Vietri J, Dawson E, Chaiyakunapruk N
Journal of medical economics  ·  10 Oct 2025  ·  doi:10.1080/13696998.2025.2565902
Factors associated with healthcare personnel glove or gown contamination with MRSA: a cohort study of VA hospitals in 5 states.
Lyndsay M O’Hara, Lisa Pineles, Michelle Newman, Mary Bahr-Robertson, Gio J Baracco, …, Richard E Nelson, J Kristie Johnson, Eli N Perencevich, Martin E Evans, Anthony D Harris
Infection control and hospital epidemiology  ·  07 Oct 2025  ·  doi:10.1017/ice.2025.10253
Visualizing information on smartwatch faces: A review and design space
Alaul Islam, Tingying He, Anastasia Bezerianos, Tanja Blascheck, Bongshin Lee, Petra Isenberg
Information Visualization  ·  07 Oct 2025  ·  doi:10.1177/14738716251360339
Off-target Impact of Clinician Feedback Reports on Antibiotic Use in Children With Medical Complexity Hospitalized With Community-Acquired Pneumonia.
Kathleen Chiotos, Lauren Dutcher, Robert W Grundmeier, Julia E Szymczak, Ebbing Lautenbach, …, Jessica Hart, Levon Utidjian, Leigh Cressman, Anne Jaskowiak-Barr, Jeffrey S Gerber
Journal of the Pediatric Infectious Diseases Society  ·  02 Oct 2025  ·  doi:10.1093/jpids/piaf089
Bridging Network Science and Vision Science: Mapping Perceptual Mechanisms to Network Visualization Tasks.
Bae SS, Cave K, Gorg C, Rosen P, Szafir DA, Bearfield CX
IEEE transactions on visualization and computer graphics  ·  01 Oct 2025  ·  doi:10.1109/tvcg.2025.3541571
Health Care Costs Associated With Norovirus at the Veterans Health Administration.
Jordan E Cates, Richard E Nelson, Ying Suo, Umesh D Parashar, Cynthia A Lucero-Obusan, Mark Holodniy, Sara A Mirza
JAMA network open  ·  01 Oct 2025  ·  doi:10.1001/jamanetworkopen.2025.36600
Remote Bone Health Service for Osteoporosis Screening in High-Risk Men: A Cluster Randomized Clinical Trial.
Cathleen Colón-Emeric, Richard Lee, Kenneth W Lyles, Leah L Zullig, Richard Sloane, Carl F Pieper, Richard E Nelson, Robert A Adler
JAMA internal medicine  ·  01 Oct 2025  ·  doi:10.1001/jamainternmed.2025.4150
Identifying Prevention Targets for Homelessness Among Recently Discharged U.S. Veterans Across Systems.
Eric B Elbogen, Mary Jo Pugh, Megan Amuan, Shannon M Blakey, Robert C Graziano, Richard E Nelson, Audrey L Jones, Jack Tsai
Health services insights  ·  28 Sep 2025  ·  doi:10.1177/11786329251375179
Food Insecurity and Chronic Disease Among Native Hawaiians and Pacific Islanders on the Continent During COVID-19.
Barhoum MAT, Rantala M, Lindell M, McElfish P, Lofgren E, Dillard D, Morgan ER
Journal of racial and ethnic health disparities  ·  27 Sep 2025  ·  doi:10.1007/s40615-025-02638-9
Standardization of labor induction management: A mixed-methods evaluation of the clinician perspective.
Jessica K Wu, Rinad S Beidas, Julia E Szymczak, Sindhu K Srinivas, Samuel Parry, Lisa D Levine, Rebecca F Hamm
Pregnancy (Hoboken, N.J.)  ·  26 Sep 2025  ·  doi:10.1002/pmf2.70117
Standard vs. enhanced implementation strategies to increase adoption of a multidrug-resistant organism alert tool: a cluster randomized trial.
Ray C, Goedken C, Hughes AM, Wilson GM, Hicks NR, …, Pfeiffer C, Klutts JS, Evans ME, Suda KJ, Evans CT
Frontiers in health services  ·  18 Sep 2025  ·  doi:10.3389/frhs.2025.1566454
Developing an approach to enhance recruitment for a cluster-randomised implementation trial: leveraging deliberative participation and credible messengers.
Valerie M Vaughn, Jennifer Horowitz, Tejal Gandhi, Robert Allan Neetz, Lindsay Petty, …, Scott A Flanders, James D Harrison, Justin D Smith, Andrea T White, Julia E Szymczak
BMJ open  ·  16 Sep 2025  ·  doi:10.1136/bmjopen-2024-094925
First Sin Nombre virus (Orthohantavirus sinnombreense) genome sequences from the Northwestern United States
Rickard G, Rivero R, Grady AC, Horton JA, Lauritsen C, Fawcett S, Goodfellow S, Oltean HN, Fernandez MP, Seifert SN
bioRxiv  ·  16 Sep 2025  ·  doi:10.1101/2025.09.10.675434
Machine Learning Enables Viral Genome-Agnostic Classification of RNA Virus Infections from Host Transcriptomes
Kaza B, Gamble A, Seifert SN, Poisot T
bioRxiv  ·  11 Sep 2025  ·  doi:10.1101/2025.09.11.675678
Machine Generalize Learning in Agent-Based Models: Going Beyond Surrogate Models for Calibration in ABMs
Sima Najafzadehkhoei, George Vega Yon, Derek S. Meyer, Bernardo Modenesi
arXiv  ·  06 Sep 2025  ·  doi:10.48550/arxiv.2509.07013
How Well Do ChatGPT and Claude Perform in Study Selection for Systematic Review in Obstetrics.
Insuk S, Boonpattharatthiti K, Booncharoen C, Chaipitak P, Rashid M, Veettil SK, Lai NM, Chaiyakunapruk N, Dhippayom T
Journal of medical systems  ·  04 Sep 2025  ·  doi:10.1007/s10916-025-02246-4
Parent and Clinician Perspectives on Diagnostic Testing for Children With Diarrhea: A Qualitative Study.
Anna Jones, Aparna Mangadu, Sarah Dallas, Olivia Hanson, Katherine Arn, Per Gesteland, Julia E Szymczak, Andrew T Pavia, Daniel T Leung, Melissa H Watt
JAMA network open  ·  02 Sep 2025  ·  doi:10.1001/jamanetworkopen.2025.31000
A qualitative study of health care professionals' attitudes and practices of mobile equipment cleaning.
Egenia Dorsan, Frank A Drews, Lindsay D Visnovsky, Molly Leecaster, Styn M Jamu, Kristina Stratford, Tavis Huber, Hannah Higgs, Matthew H Samore
American journal of infection control  ·  28 Aug 2025  ·  doi:10.1016/j.ajic.2025.08.024
Analysis of the economically justifiable price of nirsevimab to prevent respiratory syncytial virus infection in Korea.
Han HJ, Jang S, Dahye R, Lee H, Lee J, Bae EJ, Soudani S, Suh HS
Human vaccines & immunotherapeutics  ·  28 Aug 2025  ·  doi:10.1080/21645515.2025.2545637
Machine-learning-based artificial intelligence tools for the diagnosis of tropical fevers: a systematic review and meta-analysis protocol of diagnostic test accuracy.
Chitrapady S, Rajendran R, K H, M U T, Rashid M, …, Varma M, Devi V, Acharya D, Khan S, Thunga G
BMJ open  ·  25 Aug 2025  ·  doi:10.1136/bmjopen-2025-102158
"I never realized how hard recovery is." A quasi-experimental evaluation of a youth participatory action research project for opioid prevention.
Weybright EH, Hampilos K, White AJ, Grinstead C, Fees J, Greer M, Doering EL, Graham LM
American journal of community psychology  ·  22 Aug 2025  ·  doi:10.1002/ajcp.70001
Role of Generative Artificial Intelligence in Assisting Systematic Review Process in Health Research: A Systematic Review.
Rashid M, Yi CS, Sathapanasiri T, Udayachalerm S, Boonpattharatthiti K, …, Veettil SK, Lai NM, Chaiyakunapruk N, Dhippayom T, Generative Artificial Intelligence for Navigating Systematic Reviews working group
Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research  ·  22 Aug 2025  ·  doi:10.1016/j.jval.2025.07.001
Assessing Public Health Capacity for Infectious Disease Modeling: A Qualitative Study of State and Local Agencies.
Skyler J Crouch, Katie S Allen, Delaney Thornton, Joel Hartsell, Elizabeth H Weybright, Julia E Szymczak, Kimberley I Shoaf
International journal of environmental research and public health  ·  20 Aug 2025  ·  doi:10.3390/ijerph22081301
Building a Network for Community-Engaged Research Related to Substance Use Disorder Care Transitions: A Commentary With Protocol.
Michael A Incze, Julia E Szymczak, Evan Done, Laura Stolebarger, Natasha England, …, Claire E Ciarkowski, James C Willey, Alycia A Bristol, Ulises Amaton, Valerie M Vaughn
Substance use & addiction journal  ·  12 Aug 2025  ·  doi:10.1177/29767342251358099
Reframing Pattern: A Comprehensive Approach to a Composite Visual Variable.
He T, Dykes J, Isenberg P, Isenberg T
IEEE transactions on visualization and computer graphics  ·  11 Aug 2025  ·  doi:10.1109/tvcg.2025.3633909
Here's what you need to know about my data: Exploring Expert Knowledge's Role in Data Analysis.
Lin H, Lisnic M, Akbaba D, Meyer M, Lex A
IEEE transactions on visualization and computer graphics  ·  07 Aug 2025  ·  doi:10.1109/tvcg.2025.3634821
Changing grizzly bear space use and functional connectivity in response to human disturbance in the southern Canadian Rocky Mountains
Eric C. Palm, Clayton D. Apps, Tal Avgar, Melanie Dickie, Bruce N. McLellan, …, Julie W. Turner, Jesse Whittington, Erin L. Landguth, Katherine A. Zeller, Clayton T. Lamb
Conservation Science and Practice  ·  01 Aug 2025  ·  doi:10.1111/csp2.70088
Using Tactile Charts to Support Comprehension and Learning of Complex Visualizations for Blind and Low-Vision Individuals.
He T, McCracken M, Hajas D, Creem-Regehr S, Lex A
IEEE transactions on visualization and computer graphics  ·  01 Aug 2025  ·  doi:10.1109/tvcg.2025.3633874
Quantitative viral dynamics: Methods for parameter estimation.
Tower A, Owens K, Esmaeili S, Schiffer JT, Reeves DB, Schwartz EJ
Virology  ·  24 Jul 2025  ·  doi:10.1016/j.virol.2025.110631
The impact of an intervention to increase follow-up blood cultures for patients with Staphylococcus aureus bacteriuria.
Jared Olson, Vincent Anella, Brandon J Webb, Andrew T Pavia, Emily A Thorell, Adam L Hersh, Dustin Waters
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  17 Jul 2025  ·  doi:10.1017/ash.2025.10067
TATAT: a containerized software for generating annotated coding transcriptomes from raw RNA-seq data
Brown AJ, Seifert SN
bioRxiv  ·  14 Jul 2025  ·  doi:10.1101/2025.07.09.663867
Impact of COVID-19 on Incident Depression and Anxiety: A Population-Based Observational Study Using Statewide Claims Data.
Kim J, Duong KNC, Duru EE, Weir R, Manotas K, Kleinschmit K, Fischer A, Weir P, Wilson FA
Healthcare (Basel, Switzerland)  ·  08 Jul 2025  ·  doi:10.3390/healthcare13141638
Fontan Patients with a Systemic Left Ventricle Have Greater Exercise Capacity than those with a Systemic Right Ventricle: A Systematic Review and Meta-Analysis.
Anderson-Bell DM, Hardison EH, Rashid M, Hammond BH, Hegewald M, Rapp TE, Ploutz M, Williams RV, Ziebell D, Chaiyakunapruk N
Pediatric cardiology  ·  05 Jul 2025  ·  doi:10.1007/s00246-025-03932-3
An evaluation of a low-cost platelet-rich plasma for osteoarthritis of the knee: A pilot study.
Cushman DM, Johnson LA, Burnham T, Nelson R, Egbert J, Burnham R
Journal of experimental orthopaedics  ·  01 Jul 2025  ·  doi:10.1002/jeo2.70420
Microbiota Transplantation Among Patients Receiving Long-Term Care: The Sentinel REACT Nonrandomized Clinical Trial.
Michael H Woodworth, Ahmed Babiker, Radhika Prakash-Asrani, C Christina Mehta, Danielle Barrios Steed, …, Julia Van Riel, Eileen M Burd, Sarah Lohsen, Sarah W Satola, Scott K Fridkin
JAMA network open  ·  01 Jul 2025  ·  doi:10.1001/jamanetworkopen.2025.22740
Optimizing Timing for Respiratory Syncytial Virus Prevention Interventions for Infants.
Nguyen D, Lee H, Pavia AT, Nelson RE, Samore M, Chaiyakunapruk N
JAMA network open  ·  01 Jul 2025  ·  doi:10.1001/jamanetworkopen.2025.22779
HierGP: Hierarchical Grid Partitioning for Scalable Geospatial Data Analytics
Olufunso Oje, Tashi Stirewalt, Ofer Amram, Perry Hystad, Solmaz Amiri, Assefaw Gebremedhin
ACM Transactions on Spatial Algorithms and Systems  ·  30 Jun 2025  ·  doi:10.1145/3699511
Performance of three major techniques for endoscopic submucosal dissection: a systematic review and network meta-analysis.
Ramai D, Qatomah A, Chun M, Beran A, Danpanichkul P, …, Chaiyakunapruk N, Previtera M, Spadaccini M, Jacques J, Aihara H
Endoscopy  ·  25 Jun 2025  ·  doi:10.1055/a-2643-7667
A minimum data standard for wildlife disease research and surveillance.
Schwantes CJ, Sánchez CA, Stevens T, Zimmerman R, Albery G, …, Simons D, Vicente-Santos A, Wood CL, Graeden E, Carlson CJ
Scientific data  ·  21 Jun 2025  ·  doi:10.1038/s41597-025-05332-x
Assessing hospital antibiotic stewardship program (ASP) implementation: validation of an implementation science-informed survey.
Jorie Michaela Butler, Ellen Childs, Tamar Barlam, Mari-Lynn Drainoni, Caitlin Reardon, …, Eddie Stenehjem, Jincheng Shen, Chong Zhang, Angela Presson, Matthew Howard Samore
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  20 Jun 2025  ·  doi:10.1017/ash.2025.65
Risk of musculoskeletal disorders associated with Bruton's tyrosine kinase inhibitors: a disproportionality analysis of FAERS database and meta-analysis.
Zuber M, Thomas C, Taj S, Rashid M, Undela K, Ramanarayanan J, Hernandez-Ilizaliturri FJ, Villa Zapata L
Expert opinion on drug safety  ·  18 Jun 2025  ·  doi:10.1080/14740338.2025.2521358
Changes in healthcare utilization and costs following enrollment in an interprofessional primary care clinic designed to address clinical and social vulnerabilities.
Kelley AT, Yoo M, Suo Y, Nelson RE, Gordon AJ, Jones AL
Journal of interprofessional care  ·  17 Jun 2025  ·  doi:10.1080/13561820.2025.2507968
Cost-Effectiveness of Gamification, Financial Incentives, or Both to Increase Physical Activity Among Patients With Elevated Risk for Cardiovascular Disease.
Louise B Russell, Kevin G M Volpp, Mitesh S Patel, Neel P Chokshi, Samantha Coratti, …, Jingsan Zhu, Tamar Klaiman, Julia E Szymczak, Dylan S Small, Alexander C Fanaroff
Circulation. Cardiovascular quality and outcomes  ·  17 Jun 2025  ·  doi:10.1161/circoutcomes.124.011839
Impact of lifting school mask mandates on community SARS-CoV-2 cases, hospitalizations, and deaths: a retrospective observational study.
Zeynep Ertem, Anseh Danesharasteh, Sonia T Anand, Nicholas J Jackson, Richard E Nelson, Elissa M Schechter-Perkins, Lloyd Fisher, Shira Doron, Westyn Branch-Elliman
Frontiers in public health  ·  12 Jun 2025  ·  doi:10.3389/fpubh.2025.1579202
Influence of Access to Care on Decision-making About Antibiotic Duration at Discharge.
Guinn E Dunn, Andrea T White, Daniel L Giesler, Daraoun Mashrah, Adamo Brancaccio, Julia E Szymczak, Jennifer K Horowitz, Robert A Neetz, Valerie M Vaughn
Open forum infectious diseases  ·  11 Jun 2025  ·  doi:10.1093/ofid/ofaf346
Studying Veteran food insecurity longitudinally using electronic health record data and natural language processing.
Alec B Chapman, Talia Panadero, Rachel Dalrymple, Alicia Cohen, Nipa Kamdar, Farhana Pethani, Andrea Kalvesmaki, Richard E Nelson, Jorie Butler
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science  ·  10 Jun 2025  ·  pmid:40502216
Gastrointestinal Perforation as a Safety Concern Among Patients With Rheumatoid Arthritis Receiving JAK Inhibitor Therapy: A Systematic Review and Network Meta-Analysis.
Sathapanasiri T, Meraz M, Mokri H, K Veettil S, Wijarnpreecha K, Schlesinger N, Kavanaugh A, Chaiyakunapruk N
Arthritis care & research  ·  02 Jun 2025  ·  doi:10.1002/acr.25554
Accessible Text Descriptions for UpSet Plots
A. McNutt, M. K. McCracken, I. J. Eliza, D. Hajas, J. Wagoner, N. Lanza, J. Wilburn, S. Creem‐Regehr, A. Lex
Computer Graphics Forum  ·  01 Jun 2025  ·  doi:10.1111/cgf.70102
Deep Reinforcement Learning for Distribution System Operations: A Tutorial and Survey
Daniel Glover, Gayathri Krishnamoorthy, Hongda Ren, Anamika Dubey, Assefaw Gebremedhin
Proceedings of the IEEE  ·  01 Jun 2025  ·  doi:10.1109/jproc.2025.3599840
What motivates participants: a qualitative analysis of gamification and financial incentives to increase physical activity.
Eric Ryu, David Farraday, Alexander C Fanaroff, Samantha Coratti, Neel P Chokshi, …, Louise B Russell, Laurie Norton, Dylan Small, Kevin G Volpp, Tamar Klaiman
BMC public health  ·  16 May 2025  ·  doi:10.1186/s12889-025-22717-0
Readmission Following Respiratory Syncytial Virus Hospitalization among Children <5 Years of Age.
Yoonyoung Choi, Evan Heller, Linda Amoafo, Yue Zhang, Kaleb Miller, Abbey Loveridge, Madelyn Ruggieri, Per Gesteland, Krow Ampofo
Journal of the Pediatric Infectious Diseases Society  ·  13 May 2025  ·  doi:10.1093/jpids/piaf036
What drives the effectiveness of social distancing in combating COVID-19 across U.S. states?
Mu-Jeung Yang, Maclean Gaulin, Nathan Seegert, Yang Fan
PLOS One  ·  12 May 2025  ·  doi:10.1371/journal.pone.0308244
Development, validation, and reliability of a questionnaire to assess risk-factors of chronic kidney disease of unknown etiology.
Rajan AK, Khader NA, Poojari PG, Attur RP, Kamath VG, Kamath SU, Nagaraju SP, Mallayasamy SR, Rashid M, Thunga G
Journal of nephrology  ·  12 May 2025  ·  doi:10.1007/s40620-025-02297-3
Changes in Breast and Cervical Cancer Incidence by Stage at Diagnosis During the COVID-19 Pandemic in Utah.
Michelle Mumper, Leisha Nolen, Kimberly A Herget, Rachel R Codden, Marjorie E Carter, Marie Nagata, Morgan M Millar
Cancer medicine  ·  01 May 2025  ·  doi:10.1002/cam4.70952
Chemoprevention of Gastrointestinal Cancers: An Umbrella Review of Meta-Analyses of Randomized Controlled Trials and Cohort Studies.
Chan JE, Shanmugham S, Kumar S, Lee YY, Ching SM, Chaiyakunapruk N, Veettil SK
Clinical and translational science  ·  01 May 2025  ·  doi:10.1111/cts.70235
Efficacy of corticosteroids in COVID-19: An evidence-based approach from the published randomized controlled trials
Asha K. Rajan, Muhammed Rashid, Viji Pulikkel Chandran, Ambalappotta Hafis, Harsimran Kaur, Pooja Gopal Poojari, Vishal Shanbhag, Souvik Chaudhuri, Sreedharan Nair, Girish Thunga
Clinical Epidemiology and Global Health  ·  01 May 2025  ·  doi:10.1016/j.cegh.2024.101867
A Theoretical Framework to Quantify the Tradeoff Between Individual and Population Benefits of Expanded Antibiotic Use
Cormac R. LaPrete, Sharia M. Ahmed, Damon J. A. Toth, Jody R. Reimer, Valerie M. Vaughn, Frederick R. Adler, Lindsay T. Keegan
Bulletin of Mathematical Biology  ·  30 Apr 2025  ·  doi:10.1007/s11538-025-01432-2
Protocol to produce a systematic Arenavirus and Hantavirus host-pathogen database: Project ArHa.
Simons D, Rivero R, Guiote AM, Gordon HLM, Milne GC, Rickard G, Redding DW, Seifert SN
Wellcome open research  ·  28 Apr 2025  ·  doi:10.12688/wellcomeopenres.24037.1
Crowdsourced Think-Aloud Studies
Zach Cutler, Lane Harrison, Carolina Nobre, Alexander Lex
Proceedings of the 2025 CHI Conference on Human Factors in Computing Systems  ·  26 Apr 2025  ·  doi:10.1145/3706598.3714305
Role of vitamin D in the development and progression of diabetic kidney disease: an overview of meta-analyses.
Chackochan A, Rashid M, Reghunath SR, Poojari PG, Thunga G, Nagri SK, Guddattu V, Shenoy RP, Prasad Shenoy V, Acharya LD
Therapeutic advances in endocrinology and metabolism  ·  26 Apr 2025  ·  doi:10.1177/20420188251319476
Visualization Guardrails: Designing Interventions Against Cherry-Picking in Interactive Data Explorers
Maxim Lisnic, Zach Cutler, Marina Kogan, Alexander Lex
Proceedings of the 2025 CHI Conference on Human Factors in Computing Systems  ·  26 Apr 2025  ·  doi:10.1145/3706598.3713385
Combining Machine Learning and Comparative Effectiveness Methodology to Study Primary Care Pharmacotherapy Pathways for Veterans With Depression.
Ozmen O, Rush E, Park BH, Jones M, Trafton J, Brenner L, Rupper RW, Ward M, Nebeker JR, Pizer SD
Medical care  ·  22 Apr 2025  ·  doi:10.1097/mlr.0000000000002145
Prognostic value of hepatorenal markers to predict mortality in Paraquat Poisoning: a meta-analysis and retrospective validation.
Kaur H, Prathiksha AS, Johnson AS, Rashid M, Kunhikatta V, Poojari PG, Bakkannavar SM, Balakrishnan JM, Thunga G
Journal of forensic and legal medicine  ·  22 Apr 2025  ·  doi:10.1016/j.jflm.2025.102877
Vaccine Hesitancy in Malappuram District, Kerala: A Public Health Concern
Sruthi Hari, Danisha Pattani, Dilip Chandrashekhar, Muhammed Rashid PP
International Journal of Pharmaceutical Sciences and Nanotechnology  ·  15 Apr 2025  ·  doi:10.37285/ijpsn.2025.18.2.13
229E- and NL63-like coronaviruses in phyllostomid bats, Belize
Ansil BR, Lei G, Santos AJ, Letko M, Seifert SN, Fenton MB, Simmons NB, Relich RF, Becker DJ
bioRxiv  ·  10 Apr 2025  ·  doi:10.1101/2025.04.08.647854
Change in Outpatient Care Following Migration Among Veterans with Experience of Housing Instability.
Ann Elizabeth Montgomery, Kalea Jones, Kashfi Pandit, Aerin J deRussy, Richard E Nelson, Joshua S Richman, Thomas H Byrne
Journal of general internal medicine  ·  07 Apr 2025  ·  doi:10.1007/s11606-025-09494-7
Impact of all-oral bedaquiline-based shorter regimens in the treatment of drug-resistant tuberculosis: a systematic review and meta-analysis.
Ginenus Fekadu, Tadesse Tolossa, Firomsa Bekele, Xiaohan Chen, Yan He, …, Tesfaye Regassa Feyissa, Nathorn Chaiyakunapruk, Lianping Yang, Shanquan Chen, Wai-Kit Ming
BMJ global health  ·  07 Apr 2025  ·  doi:10.1136/bmjgh-2024-018220
Clinical Manifestations and Outcomes of SARS-CoV-2 Infection in Children and Adolescents.
Andrew T Pavia
Infectious disease clinics of North America  ·  04 Apr 2025  ·  doi:10.1016/j.idc.2025.02.018
An Explanatory Mixed-Methods Study of Intensive Care Unit Net Benefit: Triage and Trajectory for Sepsis and Acute Respiratory Failure.
George L Anesi, Lindsay W Glassman, Erich Dress, M Kit Delgado, Fernando X Barreda, Gabriel J Escobar, Vincent X Liu, Scott D Halpern, Julia E Szymczak
Annals of the American Thoracic Society  ·  01 Apr 2025  ·  doi:10.1513/annalsats.202408-806oc
Environmental and Health Care Personnel Sampling and Unobserved Clostridium difficile Transmission in ICU.
Lindsay T Keegan, Windy Tanner, Brian Orleans, Rachel B Slayton, John A Jernigan, …, Damon J A Toth, Tierney O’Sullivan, Matthew H Samore, William Brazelton, Michael Rubin
JAMA network open  ·  01 Apr 2025  ·  doi:10.1001/jamanetworkopen.2025.2787
Guideline-Concordant Antibiotic Use in Children With Community-Acquired Pneumonia.
James W Antoon, Hui Nian, Jessica Todd, Krow Ampofo, Yuwei Zhu, …, Donald H Arnold, Justine Stassun, Andrew T Pavia, Carlos G Grijalva, Derek J Williams
Hospital pediatrics  ·  01 Apr 2025  ·  doi:10.1542/hpeds.2024-007994
ScaWL: Scaling k-WL (Weisfeiler-Lehman) Algorithms in Memory and Performance on Shared and Distributed-Memory Systems
Coby Soss, Aravind Sukumaran Rajam, Janet Layne, Edoardo Serra, Mahantesh Halappanavar, Assefaw H. Gebremedhin
ACM Transactions on Architecture and Code Optimization  ·  30 Mar 2025  ·  doi:10.1145/3715124
The Impact of Social Norms on Diffusion Dynamics: A Simulation of E-Cigarette Use Behavior.
Piombo SE, Vega Yon GG, Valente TW
Health education & behavior : the official publication of the Society for Public Health Education  ·  27 Mar 2025  ·  doi:10.1177/10901981251327189
Adaptation and Evaluation of Strengthening Families Program for Parents and Youth 10–14 for Delivery in a Virtual Format: An Application of FRAME
Elizabeth H. Weybright, Katherine Hampilos, Kelley M. Pascoe, Brittany Rhoades Cooper, Cassandra Grinstead
Global Implementation Research and Applications  ·  21 Mar 2025  ·  doi:10.1007/s43477-025-00158-6
Machine Learning in Predicting Child Malnutrition: A Meta-Analysis of Demographic and Health Surveys Data.
Rao B, Rashid M, Hasan MG, Thunga G
International journal of environmental research and public health  ·  18 Mar 2025  ·  doi:10.3390/ijerph22030449
Understanding macroeconomic indicators affected by COVID-19 containment policies in the United States: a scoping review.
Jeong-Yeon Cho, Tejashree Prakash, Wayne Lam, Nathan Seegert, Matthew H Samore, Andrew T Pavia, Richard E Nelson, Nathorn Chaiyakunapruk
Health affairs scholar  ·  06 Mar 2025  ·  doi:10.1093/haschl/qxaf045
Characteristics and Antibiotic Preferences of US Adults Reporting Frequent Use vs No Use of Antibiotics.
Alistair Thorpe, Rachael A Lee, Angela Fagerlin, Valerie M Vaughn, Julia E Szymczak
JAMA network open  ·  03 Mar 2025  ·  doi:10.1001/jamanetworkopen.2025.1429
Effect of video-assisted educational intervention on improving knowledge, attitude and practice among mothers of children below five years on malnutrition: A systematic review.
Pujari S, Rashid M, Thunga G, Shetty RS, Mundkur SC, Devi ES, B U, Nair S
Public health  ·  28 Feb 2025  ·  doi:10.1016/j.puhe.2025.02.031
Viral genomic features predict Orthopoxvirus reservoir hosts.
Tseng KK, Koehler H, Becker DJ, Gibb R, Carlson CJ, Pilar Fernandez MD, Seifert SN
Communications biology  ·  26 Feb 2025  ·  doi:10.1038/s42003-025-07746-0
Impact of Clinician Feedback Reports on Antibiotic Use in Children Hospitalized With Community-acquired Pneumonia.
Kathleen Chiotos, Lauren Dutcher, Robert W Grundmeier, Didien Meyahnwi, Ebbing Lautenbach, …, Jessica Hart, Levon Utidjian, Leigh Cressman, Anne Jaskowiak-Barr, Jeffrey S Gerber
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  24 Feb 2025  ·  doi:10.1093/cid/ciae593
The Age-stratified Cost of Biliary Atresia: A MarketScan®-Based Cost Analysis.
Anastasia M Kahan, Anna Gongjoo Holley, Joshua Horns, Catalina Jaramillo, M Kyle Jensen, Katie W Russell, Richard E Nelson, Benjamin S Brooke, Stephen Guthery, Zachary J Kastenberg
Journal of pediatric surgery  ·  18 Feb 2025  ·  doi:10.1016/j.jpedsurg.2025.162244
Use of individual Google Location History data to identify consumer encounters with food outlets.
Oje O, Amram O, Hystad P, Gebremedhin A, Monsivais P
International journal of health geographics  ·  15 Feb 2025  ·  doi:10.1186/s12942-025-00387-w
How Does Vaccine-Induced Immunity Compare to Infection-Acquired Immunity in the Dynamics of COVID-19?
Hewage IM, Hull-Nye D, Schwartz EJ
Pathogens (Basel, Switzerland)  ·  11 Feb 2025  ·  doi:10.3390/pathogens14020179
Projecting climate change impacts on inter-epidemic risk of Rift Valley fever across East Africa
Evan A Eskew, Erin Clancey, Deepti Singh, Silvia Situma, Luke Nyakarahuka, M Kariuki Njenga, Scott L Nuismer
medRxiv  ·  10 Feb 2025  ·  doi:10.1101/2025.02.08.25321747
Dientamoeba fragilis cases identified by molecular detection, Utah, United States, 2014-2024.
Anna Jones, Marc Roger Couturier, Andrew T Pavia, Daniel T Leung
Epidemiology and infection  ·  07 Feb 2025  ·  doi:10.1017/s0950268825000159
CHAT-S Study Protocol: A randomized controlled trial of a health insurance literacy education program for young adult cancer survivors.
Mary Killela, Cindy A Turner, Amy Chevrier, Monique Stefanou, Perla L Vaca Lopez, …, Douglas B Fair, Richard E Nelson, Mark A Lewis, Elyse R Park, Anne C Kirchhoff
Preventive oncology & epidemiology  ·  06 Feb 2025  ·  doi:10.1080/28322134.2025.2455706
Association between social activities and risk of COVID-19 in a cohort of healthcare personnel.
Shoemaker H, Li H, Zhang Y, Mayer J, Rubin M, …, Cole JM, Dorsan E, Doane M, Stratford K, Samore M
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  30 Jan 2025  ·  doi:10.1017/ash.2024.485
Scoping Review of Outdoor and Land-Based Prevention Programs for Indigenous Youth in the United States and Canada.
Price FM, Weaselhead-Running Crane TD, Weybright EH
International journal of environmental research and public health  ·  28 Jan 2025  ·  doi:10.3390/ijerph22020183
Role of C5aR2 in prognosis of patients with acute respiratory distress syndrome through negative modulation of C5a: A prospective observational study.
Rashid M, Nair S, Poojari PG, Belle VS, Kunhikatta V, Vaz DA, Shanbhag V, Chandran VP, Chitrapady S, Thunga G
Heliyon  ·  23 Jan 2025  ·  doi:10.1016/j.heliyon.2025.e42146
Comparing gestational carrier with uterine transplantation in uterine-factor infertility: a cost-effectiveness analysis.
Joshua C Combs, Meghan U Yamasaki, Maura Dougherty, Kiley Hunkler, Elizabeth B Osmundsen, …, Micah J Hill, Kate Devine, Alan H DeCherney, Richard E Nelson, Jeanne E O’Brien
Fertility and sterility  ·  22 Jan 2025  ·  doi:10.1016/j.fertnstert.2025.01.012
Protocol for the production of an Arenavirus and Hantavirus host-pathogen database: Project ArHa
Simons D, Rivero R, Guiote AM, Gordon H, Milne GC, Rickard G, Redding DW, Seifert SN
bioRxiv  ·  18 Jan 2025  ·  doi:10.1101/2025.01.17.633514
Population Genomics Reveals Local Adaptation Related to Temperature Variation in Two Stream Frog Species: Implications for Vulnerability to Climate Warming.
Forester BR, Cicchino AS, Shah AA, Mudd AB, Anderson EC, …, Ghalambor CK, Landguth EL, Murray BW, Rokhsar D, Funk WC
Molecular ecology  ·  17 Jan 2025  ·  doi:10.1111/mec.17651
COVID-19 Vaccine Rollout Strategies in Utah from Local Health Departments' Perspectives: A Qualitative Analysis of Focus Group Discussions.
Duong KNC, Veettil SK, Nelson RE, Jones BE, Pavia AT, …, Jones MM, Samore MH, Zickmund SL, Galyean P, Chaiyakunapruk N
Health equity  ·  13 Jan 2025  ·  doi:10.1089/heq.2024.0067
Value driven outcome (VDO) assessment for the treatment of olecranon fractures.
Makoa Mau, Tyler Thorne, Minkyoung Yoo, Silvia Soule, Richard E Nelson, …, Michael Amick, Kayla Gates, Eleanor Sato, David L Rothberg, Lucas S Marchand
European journal of orthopaedic surgery & traumatology : orthopedie traumatologie  ·  07 Jan 2025  ·  doi:10.1007/s00590-024-04151-x
Time-varying reproductive number estimation for practical application in structured populations.
Clancey E, Lofgren ET
Epidemiologic methods  ·  06 Jan 2025  ·  doi:10.1515/em-2024-0020
Efficacy and Safety of Glycopyrrolate in the Management of Organophosphate and Carbamate Poisoning: A Systematic Review.
Rashid M, Poojari PG, Chandran VP, Shetty R, Kaur H, Nair S, Thunga G
Current reviews in clinical and experimental pharmacology  ·  01 Jan 2025  ·  doi:10.2174/0127724328290595240509051331

2024

The effect of a Veterans Affairs rapid rehousing and homelessness prevention program on long-term housing instability.
Alec B Chapman, Daniel Scharfstein, Thomas Byrne, Ann Elizabeth Montgomery, Ying Suo, …, Tom Greene, Jack Tsai, Lillian Gelberg, Stefan G Kertesz, Richard E Nelson
Health services research  ·  30 Dec 2024  ·  doi:10.1111/1475-6773.14428
Systematic literature review of cost-effectiveness analyses of adult 15- and 20-valent pneumococcal vaccines.
Cho JY, Lee H, Wannaadisai W, Vietri J, Chaiyakunapruk N
Vaccine  ·  27 Dec 2024  ·  doi:10.1016/j.vaccine.2024.126656
A population-level analysis of armed conflict and diphtheria at the subnational level in the WHO African Region 2017-2024
O’Sullivan T, Keegan LT
medRxiv  ·  20 Dec 2024  ·  doi:10.1101/2024.12.18.24319262
Cost-effectiveness studies of brexu-cel for relapsed/refractory B-cell acute lymphoblastic leukemia and mantle cell lymphoma: a systematic review.
Khatiwada AP, Kamel AMA, Chaiyakunapruk N, Ngorsuraches S
Expert review of pharmacoeconomics & outcomes research  ·  13 Dec 2024  ·  doi:10.1080/14737167.2024.2438631
Smartphone Google Location History: A Novel Approach to Outdoor Physical Activity Research.
Amram O, Oje O, Larkin A, Boakye K, Avery A, Gebremedhin A, Williams B, Duncan GE, Hystad P
Journal of physical activity & health  ·  11 Dec 2024  ·  doi:10.1123/jpah.2024-0360
Value of Innovative Multiple Myeloma Treatments from Patient and Healthcare Provider Perspectives: Evidence from a Discrete Choice Experiment.
Syeed S, Tan CJ, Godara A, Gooden K, Tang D, Slaff S, Shih YH, Ngorsuraches S, Chaiyakunapruk N
PharmacoEconomics  ·  06 Dec 2024  ·  doi:10.1007/s40273-024-01459-8
Respiratory equality: let's stop playing favorites with COVID-19 in the healthcare setting.
Catherine L Passaretti, Werner Bischoff, Justin Chan, Daniel J Diekema, Shira Doron, …, Michael P Stevens, Julie E Szymczak, Francesca Torriani, Deborah S Yokoe, Jonas Marschall
Infection control and hospital epidemiology  ·  04 Dec 2024  ·  doi:10.1017/ice.2024.197
Etiologies of Bloody Diarrhea in Children Presenting With Acute Gastroenteritis to US Emergency Departments.
Paola Fonseca-Romero, Ben J Brintz, D Matthew Vierkant, Jennifer Dien Bard, Daniel M Cohen, …, Kimberle C Chapin, Andrew T Pavia, Sharia M Ahmed, Daniel T Leung, IMPACT study investigators
Open forum infectious diseases  ·  27 Nov 2024  ·  doi:10.1093/ofid/ofae692
Aardvark: Composite Visualizations of Trees, Time-Series, and Images.
Lange D, Judson-Torres R, Zangle TA, Lex A
IEEE transactions on visualization and computer graphics  ·  25 Nov 2024  ·  doi:10.1109/tvcg.2024.3456193
Loops: Leveraging Provenance and Visualization to Support Exploratory Data Analysis in Notebooks.
Eckelt K, Gadhave K, Lex A, Streit M
IEEE transactions on visualization and computer graphics  ·  25 Nov 2024  ·  doi:10.1109/tvcg.2024.3456186
PREVis: Perceived Readability Evaluation for Visualizations.
Cabouat AF, He T, Isenberg P, Isenberg T
IEEE transactions on visualization and computer graphics  ·  25 Nov 2024  ·  doi:10.1109/tvcg.2024.3456318
A Multi-task Learning Approach for Predicting Spatio-temporal Patient Variables
Kaniz Fatema Madhobi, Eric Lofgren, Ananth Kalyanaraman
Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics  ·  22 Nov 2024  ·  doi:10.1145/3698587.3701340
Unraveling the complex interplay of sex, endocrinology, and inflammation in post-Injury articular cartilage breakdown through in silico modeling.
C Hutcherson, B Luke, K Khader, Y Y Dhaher
Scientific reports  ·  19 Nov 2024  ·  doi:10.1038/s41598-024-77730-x
Viral susceptibility and innate immune competency of Carollia perspicillata bat cells produced for virological studies.
Victoria Gonzalez, Cierra Word, Nahomi Guerra-Pilaquinga, Mitra Mazinani, Stephen Fawcett, …, Alison M Kell, Rohit K Jangra, Arinjay Banerjee, Stephanie N Seifert, Michael Letko
bioRxiv  ·  19 Nov 2024  ·  doi:10.1101/2024.11.19.624190
Projected Cost Savings With Optimal Medication Adherence in Patients With Cardiovascular Disease Requiring Lipid-Lowering Therapy: A Multinational Economic Evaluation Study.
Cho JY, Wilson FA, Chaikledkaew U, Chen Y, Phrommintikul A, Diaz-Aguilera MA, Chen Z, Kim K, Chaiyakunapruk N
Journal of the American Heart Association  ·  15 Nov 2024  ·  doi:10.1161/jaha.124.037792
A cross-sectional survey of Department of Veterans Affairs laboratory practices for identification of carbapenem-resistant Acinetobacter baumannii and Pseudomonas aeruginosa .
Sawyer AM, Ray C, Klutts JS, Fitzpatrick M, Suda KJ, …, Evans M, Jones M, Pfeiffer CD, Evans CT, QUERI CARRIAGE Program
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  11 Nov 2024  ·  doi:10.1017/ash.2024.404
Studying bats using a One Health lens: bridging the gap between bat virology and disease ecology.
Gonzalez V, Hurtado-Monzón AM, O’Krafka S, Mühlberger E, Letko M, …, Munster VJ, Falzarano D, Schountz T, Seifert SN, Banerjee A
Journal of virology  ·  05 Nov 2024  ·  doi:10.1128/jvi.01453-24
Cost-Effectiveness of Temporary Financial Assistance for Veterans Experiencing Housing Instability.
Richard E Nelson, Alec Chapman, Thomas Byrne, Nathorn Chaiyakunapruk, Ying Suo, …, Warren Pettey, Lillian Gelberg, Stefan G Kertesz, Jack Tsai, Ann Elizabeth Montgomery
JAMA network open  ·  04 Nov 2024  ·  doi:10.1001/jamanetworkopen.2024.43396
Cybersecurity Education: Insights From a Novel Cybersecurity Summer Workshop
James Crabb, Clemente Izurieta, Bernard Van Wie, Olusola Adesope, Assefaw Gebremedhin
IEEE Security & Privacy  ·  01 Nov 2024  ·  doi:10.1109/msec.2024.3473188
Economics, equity and avoidable mortality.
Cho JY, Chaiyakunapruk N
Nature medicine  ·  01 Nov 2024  ·  doi:10.1038/s41591-024-03303-0
Effectiveness and Safety of an Emergency Department Code Sepsis Protocol: A Pragmatic Clinical Trial.
Ithan D Peltan, Joseph R Bledsoe, Jason R Jacobs, Danielle Groat, Carolyn Klippel, …, Jeremy Bair, Andrew Dorais, Matthew H Samore, Catherine L Hough, Samuel M Brown
Annals of the American Thoracic Society  ·  01 Nov 2024  ·  doi:10.1513/annalsats.202403-286oc
Real-World Assessment of Economic and Clinical Outcomes in Thai Patients With Respiratory Syncytial Virus Infection Across Age Groups: A Retrospective Cohort Analysis.
Khaing W, Tan CJ, Patikorn C, Techasaensiri C, Pattanaprateep O, Dhippayom T, Bruminhent J, Chaiyakunapruk N
Influenza and other respiratory viruses  ·  01 Nov 2024  ·  doi:10.1111/irv.70039
Applying Generative Machine Learning to Intrusion Detection: A Systematic Mapping Study and Review
James Halvorsen, Clemente Izurieta, Haipeng Cai, Assefaw Gebremedhin
ACM Computing Surveys  ·  30 Oct 2024  ·  doi:10.1145/3659575
The Effectiveness of Face Mask Mandates on COVID-19 Transmission in Utah.
Horn AC, Shoemaker HE, Keegan LT
Public health reports (Washington, D.C. : 1974)  ·  30 Oct 2024  ·  doi:10.1177/00333549241290676
Perceptions of patients and caregivers toward the management of rare disease in Malaysia: a qualitative research study.
Supian A, Shafie AA, Ngu LH, Ayob H, Chaiyakunapruk N
International journal of technology assessment in health care  ·  24 Oct 2024  ·  doi:10.1017/s0266462324000333
Real-world clinical and economic outcomes from rapid start antiretroviral therapy in HIV: systematic review and meta-analysis.
Duong KNC, Schmutz HW, Ben-Umeh KC, Duru EE, Rose N, Trom C, Chaiyakunapruk N, Willis C
AIDS (London, England)  ·  24 Oct 2024  ·  doi:10.1097/qad.0000000000004046
Exploring methodological approaches used in network meta-analysis of psychological interventions: A scoping review.
Boonpattharatthiti K, Ruenin G, Kulwong P, Lueawattanasakul J, Saechao C, Pitak P, Caldwell DM, Chaiyakunapruk N, Dhippayom T
Research synthesis methods  ·  23 Oct 2024  ·  doi:10.1002/jrsm.1764
Determinants of and barriers to diabetes care among patients with serious mental illness: A scoping review with recommendations.
Prathiksha AS, Shantaram PM, Rashid M, Poojari PG, Nair S, Acharya LD, Thunga G
Diabetes & metabolic syndrome  ·  22 Oct 2024  ·  doi:10.1016/j.dsx.2024.103139
Facets of Disparate Impact: Evaluating Legally Consistent Bias in Machine Learning
Jarren Briscoe, Assefaw Gebremedhin
Proceedings of the 33rd ACM International Conference on Information and Knowledge Management  ·  21 Oct 2024  ·  doi:10.1145/3627673.3679925
Impacts of testing and immunity acquired through vaccination and infection on covid-19 cases in Massachusetts elementary and secondary students.
Westyn Branch-Elliman, Melissa Zeynep Ertem, Richard E Nelson, Anseh Danesharasteh, David Berlin, Lloyd Fisher, Elissa M Schechter-Perkins
Communications medicine  ·  16 Oct 2024  ·  doi:10.1038/s43856-024-00619-3
Etiology of Severely Dehydrating Diarrheal Illness in Infants and Young Children Residing in Low- and Middle-Income Countries.
Anna Jones, Sharia M Ahmed, James A Platts-Mills, Karen L Kotloff, Adam C Levine, Eric J Nelson, Andrew T Pavia, Ashraful I Khan, Daniel T Leung
Open forum infectious diseases  ·  11 Oct 2024  ·  doi:10.1093/ofid/ofae619
The translation-to-policy learning cycle to improve public health.
Amy M Kilbourne, Melissa Z Braganza, Dawn M Bravata, Jack Tsai, Richard E Nelson, Alex Meredith, Kenute Myrie, Rachel Ramoni
Learning health systems  ·  11 Oct 2024  ·  doi:10.1002/lrh2.10463
Navigating the Landscape: Barriers and Facilitators in Electronic Case Reporting Implementation Across Public Health Agencies.
Joel D Hartsell, Catherine Staes, Katie S Allen, Angela C Dunn, Fernando A Wilson, Matthew H Samore, Kimberley Shoaf
Journal of public health management and practice : JPHMP  ·  05 Oct 2024  ·  doi:10.1097/phh.0000000000001825
Association between insulin adherence and hemoglobin A1c: A systematic review and meta-analysis
Nguyen D, Liang X, Nguyen S, Tan C, Patikorn C, Veettil S, Brixner D, Chaiyakunapruk N
Journal of managed care & specialty pharmacy  ·  01 Oct 2024  ·  insightnet:0ea1783aab39367d0dd0
Reconstructing mountain goat history in the Olympic Mountains, USA
Melissa M. Oscarson, Erin L. Landguth, David O. Wallin
Population Ecology  ·  01 Oct 2024  ·  doi:10.1002/1438-390x.12179
Developing Evidence to Support Policy: Protocol for the StrAtegic PoLicy EvIdence-Based Evaluation CeNTer (SALIENT).
Pugh MJ, Haun JN, White PJ, Cochran G, Mohanty AF, …, Benzinger RC, Jones AL, Kean J, Zickmund SL, Fagerlin A
JMIR research protocols  ·  19 Sep 2024  ·  doi:10.2196/59830
Uncertainty Visualization of Critical Points of 2D Scalar Fields for Parametric and Nonparametric Probabilistic Models.
Athawale TM, Wang Z, Pugmire D, Moreland K, Gong Q, Klasky S, Johnson CR, Rosen P
IEEE transactions on visualization and computer graphics  ·  10 Sep 2024  ·  doi:10.1109/tvcg.2024.3456393
A Qualitative Analysis of Common Practices in Annotations: A Taxonomy and Design Space.
Rahman MD, Quadri GJ, Doppalapudi B, Szafir DA, Rosen P
IEEE transactions on visualization and computer graphics  ·  09 Sep 2024  ·  doi:10.1109/tvcg.2024.3456359
Predicting antibiotic resistance in Enterobacterales to support optimal empiric treatment of urinary tract infections in outpatient veterans.
Ben J Brintz, Karl Madaras-Kelly, McKenna Nevers, Kelly L Echevarria, Matthew B Goetz, Matthew H Samore
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  09 Sep 2024  ·  doi:10.1017/ash.2024.377
Encoding with Patterns : A Design Space and Evaluations
Tingying He
[no publisher info]  ·  06 Sep 2024  ·  doi:10.70675/e7a3aae1z9bf6z4ac1z969cz6e02b07f0082
A call to action: the SHEA research agenda to combat healthcare-associated infections.
Kwon JH, Advani SD, Branch-Elliman W, Braun BI, Cheng VC, …, Ting JY, Weston GD, Yassin MH, Ziegler MJ, Mody L
Infection control and hospital epidemiology  ·  01 Sep 2024  ·  doi:10.1017/ice.2024.125
Cost and cost-effectiveness of treatments for rheumatic heart disease in low- and middle-income countries: a systematic review protocol.
Thangamma Ag M, Vidyadharan B, Daniel RP, Sirur A, Kumar P, …, Gopal Poojari P, Rashid M, Mukherjee N, Bhattacharya P, John D
JBI evidence synthesis  ·  01 Sep 2024  ·  doi:10.11124/jbies-23-00246
Drivers of Inpatient Subspecialty Consultation Among Pediatric Hospitalists: A Qualitative Study.
Andrew S Kern-Goldberger, Danny Bracy, Julia E Szymczak, Denise Gonzalez, Michael B Rothberg, Jeffrey S Gerber, Christopher P Bonafide
Hospital pediatrics  ·  01 Sep 2024  ·  doi:10.1542/hpeds.2023-007589
A theoretical framework to quantify the tradeoff between individual and population benefits of expanded antibiotic use
LaPrete CR, Ahmed SM, Toth DJ, Reimer JR, Vaughn VM, Adler FR, Keegan LT
Bulletin of mathematical biology  ·  28 Aug 2024  ·  doi:10.1101/2024.08.28.24312731
Disentangling effects of dispersal, environment and anthropogenic barriers on functional connectivity in aquatic systems.
Day CC, Alò D, Simmons RK, Cotey SR, Zarn KE, …, Small M, Fortin MJ, Bearlin AR, Smith SR, Landguth EL
Molecular ecology  ·  26 Aug 2024  ·  doi:10.1111/mec.17500
What's in a name? On the rhetorical harm of 'never events'.
Julia Szymczak
BMJ quality & safety  ·  16 Aug 2024  ·  doi:10.1136/bmjqs-2024-017395
Trends in infection incidence and antimicrobial resistance in the US Veterans Affairs Healthcare System: a nationwide retrospective cohort study (2007-22).
Thi Mui Pham, Yue Zhang, McKenna Nevers, Haojia Li, Karim Khader, Yonatan H Grad, Marc Lipsitch, Matthew Samore
The Lancet. Infectious diseases  ·  13 Aug 2024  ·  doi:10.1016/s1473-3099(24)00416-x
Prevalence of adherence to oral antidiabetic drugs in patients with type 2 diabetes: A systematic review and meta-analysis.
Boonpattharatthiti K, Songkla PN, Chantara J, Koomsri C, Krass I, Chaiyakunapruk N, Dhippayom T
Journal of diabetes investigation  ·  12 Aug 2024  ·  doi:10.1111/jdi.14285
Importance of underlying mechanisms for interpreting relative risk of Clostridioides difficile infection among antibiotic-exposed patients in healthcare facilities.
Mitchell C, Keegan LT, Le TTT, Khader K, Beams A, Samore MH, Toth DJA
PloS one  ·  08 Aug 2024  ·  doi:10.1371/journal.pone.0306622
Antimicrobial use before and during COVID-19: data from 108 Veterans Affairs medical centers.
Matthew Bidwell Goetz, Tina Willson, Michael A Rubin, Vanessa W Stevens, Christopher J Graber
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  07 Aug 2024  ·  doi:10.1017/ash.2024.352
Managing institutional conflicts: Stakeholder accounts of communication between conflict of interest and technology transfer offices.
Matthew S McCoy, Michaela Ward, Rebecca Neergaard, Steven Joffe, Julia E Szymczak
PloS one  ·  07 Aug 2024  ·  doi:10.1371/journal.pone.0304519
Diagnostic Discordance, Uncertainty, and Treatment Ambiguity in Community-Acquired Pneumonia : A National Cohort Study of 115 U.S. Veterans Affairs Hospitals.
Jones BE, Chapman AB, Ying J, Rutter ED, Nevers MR, …, Taber PA, Weir CD, Jones MM, Samore MH, Butler JM
Annals of internal medicine  ·  06 Aug 2024  ·  doi:10.7326/m23-2505
Glycated Hemoglobin A1c Time in Range and Dementia in Older Adults With Diabetes.
Patricia C Underwood, Libin Zhang, David C Mohr, Julia C Prentice, Richard E Nelson, Andrew E Budson, Paul R Conlin
JAMA network open  ·  01 Aug 2024  ·  doi:10.1001/jamanetworkopen.2024.25354
Prevalence of and Risks for Bacterial Infections in Hospitalized Children With Bronchiolitis.
Noelle Cadotte, Hannah Moore, Bryan L Stone, Nicole L Pershing, Krow Ampofo, Zhining Ou, Andrew T Pavia, Anne J Blaschke, Brian Flaherty, Hillary Crandall
Hospital pediatrics  ·  01 Aug 2024  ·  doi:10.1542/hpeds.2023-007549
Socio‐economic association of alcohol use disorder and cardiovascular and alcohol‐associated liver disease from 2010 to 2019
Pojsakorn Danpanichkul, Vincent L Chen, Nathorn Chaiyakunapruk, Thanida Auttapracha, Siwanart Kongarin, …, Luis Antonio Díaz, Juan Pablo Arab, Jessica Leigh Mellinger, Suthat Liangpunsakul, Karn Wijarnpreecha
Alimentary Pharmacology & Therapeutics  ·  01 Aug 2024  ·  doi:10.1111/apt.18095
Investigating racial and gender disparities in virtual randomized clinical trial enrollment: Insights from the BE ACTIVE study.
Michael P Fortunato, Anthony Girard, Samantha Coratti, David Farraday, Laurie Norton, …, Louise B Russell, Dylan S Small, Mitesh S Patel, Kevin G M Volpp, Alexander C Fanaroff
American heart journal  ·  30 Jul 2024  ·  doi:10.1016/j.ahj.2024.06.003
Information and resources VA health system leaders need to manage enrollment and retention for Post-9/11 veterans.
Todd Brown, Angela Fagerlin, Matthew H Samore, Alex H S Harris, Patrick Galyean, Susan Zickmund, Warren B P Pettey, Megan E Vanneman
Health services research  ·  28 Jul 2024  ·  doi:10.1111/1475-6773.14351
Contrasting Perceptions, Knowledge, and Actions around Lyme Disease in an Urban Area of Emerging Lyme Disease and an Area of Endemic Lyme Disease in the Northeastern United States.
Kacey C Ernst, Pilar Fernandez, Maria Diuk-Wasser, Aaron J Enriquez, Kevin Berry, Mary H Hayden
The American journal of tropical medicine and hygiene  ·  23 Jul 2024  ·  doi:10.4269/ajtmh.24-0035
Evaluation of hospital-onset bacteraemia and fungaemia in the USA as a potential healthcare quality measure: a cross-sectional study.
Surbhi Leekha, Gwen L Robinson, Jesse T Jacob, Scott Fridkin, Andi Shane, …, Sujan Reddy, Clayton H Brown, Raymund B Dantes, Anthony D Harris, CDC Prevention Epicenters Program
BMJ quality & safety  ·  22 Jul 2024  ·  doi:10.1136/bmjqs-2023-016831
Is hospital-onset bacteraemia and fungaemia an actionable quality measure?
Chanu Rhee, Payal Patel, Julia Szymczak
BMJ quality & safety  ·  22 Jul 2024  ·  doi:10.1136/bmjqs-2024-017292
Infectious disease surveillance needs for the United States: lessons from Covid-19.
Lipsitch M, Bassett MT, Brownstein JS, Elliott P, Eyre D, …, Slayton RB, Swerdlow DL, Truelove S, Varma JK, Grad YH
Frontiers in public health  ·  15 Jul 2024  ·  doi:10.3389/fpubh.2024.1408193
Measuring the Direct Medical Costs of Hospital-Onset Infections Using an Analogy Costing Framework.
Scott RD 2nd, Culler SD, Baggs J, Reddy SC, Slifka KJ, …, Kazakova SV, Jernigan JA, Nelson RE, Rosenman RE, Wandschneider PR
PharmacoEconomics  ·  05 Jul 2024  ·  doi:10.1007/s40273-024-01400-z
Estimated global and regional economic burden of genital herpes simplex virus infection among 15-49 year-olds in 2016.
Chaiyakunapruk N, Lee SWH, Kulchaitanaroaj P, Rayanakorn A, Lee H, Looker KJ, Hutubessy R, Gottlieb SL
BMC global and public health  ·  02 Jul 2024  ·  doi:10.1186/s44263-024-00053-6
Assessing the dynamics of PrEP adoption in a national-scale physician network
Matthew Sargent, Luke J. Matthews, George Vega Yon, Erik D. Storholm, Allison J. Ober, Harold D. Green
Social Networks  ·  01 Jul 2024  ·  doi:10.1016/j.socnet.2024.02.001
Conceptualization of Firearm-Related Terms Among Rural Adolescents: Definitions Matter.
Weybright EH, Hall A, Willoughby J, Dalve K, Schleimer J, …, Watters C, Gause E, Kuklinski MR, Varrella G, Rowhani-Rahbar A
Youth & society  ·  01 Jul 2024  ·  doi:10.1177/0044118x241263968
Imaginary network motifs: Structural patterns of false positives and negatives in social networks
Kyosuke Tanaka, George G. Vega Yon
Social Networks  ·  01 Jul 2024  ·  doi:10.1016/j.socnet.2023.11.005
A simple modification to the classical SIR model to estimate the proportion of under-reported infections using case studies in flu and COVID-19.
Kalachev L, Graham J, Landguth EL
Infectious Disease Modelling  ·  16 Jun 2024  ·  doi:10.1016/j.idm.2024.06.002
Excellence in Antibiotic Stewardship: A Mixed-Methods Study Comparing High-, Medium-, and Low-Performing Hospitals.
Valerie M Vaughn, Sarah L Krein, Adam L Hersh, Whitney R Buckel, Andrea T White, …, Elisabeth Kimball, Kennedi Bloomquist, Tobias Zickmund, Susan L Zickmund, Julia E Szymczak
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  14 Jun 2024  ·  doi:10.1093/cid/ciad743
Automating detection of diagnostic error of infectious diseases using machine learning.
Peterson KS, Chapman AB, Widanagamaachchi W, Sutton J, Ochoa B, Jones BE, Stevens V, Classen DC, Jones MM
PLOS digital health  ·  07 Jun 2024  ·  doi:10.1371/journal.pdig.0000528
Incorporating social determinants of health into transmission modeling of COVID-19 vaccine in the US: a scoping review.
Duong KNC, Nguyen DT, Kategeaw W, Liang X, Khaing W, …, Dorsan E, Toth DJA, Jones MM, Samore MH, Chaiyakunapruk N
Lancet regional health. Americas  ·  07 Jun 2024  ·  doi:10.1016/j.lana.2024.100806
Economic Evaluation of Fixed-dose Drug Combinations: A Systematic Review
Phung TL, Ong DT, Ngo NT, Pham TT, Nguyen HT, Duong KN, Dang MTN, Alcusky MJ, Amante DJ, Nguyen HL
Journal of Applied Pharmaceutical Science  ·  06 Jun 2024  ·  doi:10.21203/rs.3.rs-4536102/v1
Clostridioides Difficile Infection in the Elderly: Trend Analysis from 2000 to 2019
Pojsakorn Danpanichkul, Kwanjit Duangsonk, Ekdanai Uawithya, Siwanart Kongarin, Daniel M Simadibrata, …, Apichat Kaewdech, Nuttada Panpradist, Nathorn Chaiyakunapruk, Jakrapun Pupaibool, Karn Wijarnpreecha
Journal of Clinical Medicine  ·  01 Jun 2024  ·  doi:10.3390/jcm13133740
Persist: Persistent and Reusable Interactions in Computational Notebooks
K. Gadhave, Z. Cutler, A. Lex
Computer Graphics Forum  ·  01 Jun 2024  ·  doi:10.1111/cgf.15092
Pneumonia diagnosis performance in the emergency department: a mixed-methods study about clinicians' experiences and exploration of individual differences and response to diagnostic performance feedback.
Butler JM, Taft T, Taber P, Rutter E, Fix M, …, Classen D, Cosby K, Jones M, Chapman A, Jones BE
Journal of the American Medical Informatics Association : JAMIA  ·  01 Jun 2024  ·  doi:10.1093/jamia/ocae112
The Role of Cooperative Extension in Delivering Training and Technical Assistance to Support Evidence-Based Behavioral Health Practices in Rural Communities.
Weybright E, Phibbs S, Watters C, Myers A, Peavy M, Martin A
Evaluation & the health professions  ·  01 Jun 2024  ·  doi:10.1177/01632787241237515
Vaccine-associated paralytic poliomyelitis in oral polio vaccine recipients: disproportionality analysis using VAERS and systematic review.
Suares JE, Khan S, Aadrika A, Poojari PG, Rashid M, Thunga G
Expert opinion on drug safety  ·  30 May 2024  ·  doi:10.1080/14740338.2024.2359616
Development and implementation of a nationwide multidrug-resistant organism tracking and alert system for Veterans Affairs medical centers.
Pfeiffer CD, Jones MM, Klutts JS, Francis QA, Flegal HM, Murray AO, Willson TM, Hicks NR, Evans CT, Evans ME
Infection control and hospital epidemiology  ·  24 May 2024  ·  doi:10.1017/ice.2024.79
Strategies for recruiting adolescents in rural areas in firearm injury research.
Weybright E, Hall A, Ellyson AM, Varrella G, Kuklinski MR, Gause E, Schleimer J, Dalve K, Rowhani-Rahbar A
Injury prevention : journal of the International Society for Child and Adolescent Injury Prevention  ·  20 May 2024  ·  doi:10.1136/ip-2023-045104
Financial hardship among patients suffering from neglected tropical diseases: A systematic review and meta-analysis of global literature.
Patikorn C, Cho JY, Higashi J, Huang XX, Chaiyakunapruk N
PLoS neglected tropical diseases  ·  13 May 2024  ·  doi:10.1371/journal.pntd.0012086
"Yeah, this graph doesn't show that": Analysis of Online Engagement with Misleading Data Visualizations
Maxim Lisnic, Alexander Lex, Marina Kogan
Proceedings of the CHI Conference on Human Factors in Computing Systems  ·  11 May 2024  ·  doi:10.1145/3613904.3642448
Do You See What I See? A Qualitative Study Eliciting High-Level Visualization Comprehension
Ghulam Jilani Quadri, Arran Zeyu Wang, Zhehao Wang, Jennifer Adorno, Paul Rosen, Danielle Albers Szafir
Proceedings of the CHI Conference on Human Factors in Computing Systems  ·  11 May 2024  ·  doi:10.1145/3613904.3642813
Medication errors in emergency departments: a systematic review and meta-analysis of prevalence and severity.
Nguyen PTL, Phan TAT, Vo VBN, Ngo NTN, Nguyen HT, Phung TL, Kieu MTT, Nguyen TH, Duong KNC
International journal of clinical pharmacy  ·  11 May 2024  ·  doi:10.1007/s11096-024-01742-w
A Qualitative Study Identifying the Potential Risk Mechanisms Leading to Hospitalization for Patients With Chronic Lung Disease.
Gary E Weissman, Jasmine A Silvestri, Folasade Lapite, Isabelle S Mullen, Nicholas S Bishop, …, Vivek N Ahya, Shreya Kangovi, Tamar A Klaiman, Julia E Szymczak, Joanna L Hart
CHEST pulmonary  ·  03 May 2024  ·  doi:10.1016/j.chpulm.2024.100060
Facility- and patient-level factors associated with implementation of contact precautions in hospitalized VA patients with positive CRE cultures.
Wilson GM, Fitzpatrick M, Suda KJ, Poggensee L, Jones M, Evans ME, Evans CT
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  03 May 2024  ·  doi:10.1017/ash.2024.36
SNAPSHOT USA 2021: A third coordinated national camera trap survey of the United States.
Hila Shamon, Roi Maor, Michael V Cove, Roland Kays, Jessie Adley, …, Andrew M Wilson, Alexander J Wolf, Marketa Zimova, Adam S Zorn, William J McShea
Ecology  ·  01 May 2024  ·  doi:10.1002/ecy.4318
Model-based estimates of age-structured SARS-CoV-2 epidemiology in households
Toth DJ, Sheets TR, Beams AB, Ahmed SM, Seegert N, Love J, Keegan LT, Samore MH
BMC public health  ·  19 Apr 2024  ·  doi:10.1101/2024.04.18.24306047
Adolescent Boredom in Leisure
Elizabeth Weybright, Linda L. Caldwell
The Routledge International Handbook of Boredom  ·  18 Apr 2024  ·  doi:10.4324/9781003271536-20
Factors associated with testing positive for SARS-CoV-2 and evaluation of a recruitment protocol among healthcare personnel in a COVID-19 vaccine effectiveness study.
Morgan M Millar, Jeanmarie Mayer, Jacob Crook, Kristina M Stratford, Tavis Huber, Matthew H Samore
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  16 Apr 2024  ·  doi:10.1017/ash.2024.44
Research agenda for transmission prevention within the Veterans Health Administration, 2024-2028.
Matthew Smith, Chris Crnich, Curtis Donskey, Charlesnika T Evans, Martin Evans, …, Marin L Schweizer, Suzanne Tovar, Geneva Wilson, Trina Zabarsky, Eli N Perencevich
Infection control and hospital epidemiology  ·  11 Apr 2024  ·  doi:10.1017/ice.2024.40
Effect of Gamification, Financial Incentives, or Both to Increase Physical Activity Among Patients at High Risk of Cardiovascular Events: The BE ACTIVE Randomized Controlled Trial.
Alexander C Fanaroff, Mitesh S Patel, Neel Chokshi, Samantha Coratti, David Farraday, …, Tamar Klaiman, Julia E Szymczak, Louise B Russell, Dylan S Small, Kevin G M Volpp
Circulation  ·  07 Apr 2024  ·  doi:10.1161/circulationaha.124.069531
Drivers of inappropriate use of antimicrobials in South Asia: A systematic review of qualitative literature.
Murray JL, Leung DT, Hanson OR, Ahmed SM, Pavia AT, …, Szymczak JE, Vaughn VM, Patel PK, Biswas D, Watt MH
PLOS global public health  ·  04 Apr 2024  ·  doi:10.1371/journal.pgph.0002507
User-Centered Design and Implementation of an Interoperable FHIR Application for Pediatric Pneumonia Prognostication in a Randomized Trial.
Robert W Turer, Stephen C Gradwohl, Justine Stassun, Jakobi Johnson, Jason M Slagle, …, Krow Ampofo, Andrew T Pavia, Matthew B Weinger, Derek J Williams, Asli O Weitkamp
Applied clinical informatics  ·  02 Apr 2024  ·  doi:10.1055/a-2297-9129
Associations of Anxiety, Insomnia, and Physical Activity during the COVID-19 Pandemic.
Tobin SY, Halliday TM, Shoaf K, Burns RD, Baron KG
International journal of environmental research and public health  ·  01 Apr 2024  ·  doi:10.3390/ijerph21040428
Cooperative extension as a key partner to behavioral health in rural communities.
Elizabeth Weybright, Erica L. Doering, Katherine Hampilos, John M. Roll, Celestina Barbosa-Leiker, Michael G. McDonell
Journal of Rural Mental Health  ·  01 Apr 2024  ·  doi:10.1037/rmh0000256
3D Printers in Hospitals: Bacterial Contamination of Common and Antimicrobial 3D-Printed Material
Jackson KC, Clancey E, Call DR, Lofgren E
bioRxiv  ·  30 Mar 2024  ·  doi:10.1101/2024.03.30.587440
Incremental net monetary benefit of using varenicline for smoking cessation: A systematic review and meta-analysis of economic evaluation studies.
Chaisai C, Patikorn C, Thavorn K, Lee SWH, Chaiyakunapruk N, Veettil SK
Addiction (Abingdon, England)  ·  22 Mar 2024  ·  doi:10.1111/add.16464
Clinical Impact of Multiplex Molecular Diagnostic Testing in Children With Acute Gastroenteritis Presenting to an Emergency Department: A Multicenter Prospective Study.
Andrew T Pavia, Daniel M Cohen, Amy L Leber, Judy A Daly, Jami T Jackson, …, Benjamin Haaland, Kevin M Bourzac, Christopher Stockmann, Kimberle C Chapin, Daniel T Leung
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  20 Mar 2024  ·  doi:10.1093/cid/ciad710
A framework for inferring and analyzing pharmacotherapy treatment patterns.
Rush E, Ozmen O, Kim M, Ortegon ER, Jones M, …, Pizer S, Trafton J, Brenner LA, Ward M, Nebeker JR
BMC medical informatics and decision making  ·  08 Mar 2024  ·  doi:10.1186/s12911-024-02469-4
A Critical Review of Cybersecurity Education in the United States
James Crabb, Christopher Hundhausen, Assefaw Gebremedhin
Proceedings of the 55th ACM Technical Symposium on Computer Science Education V. 1  ·  07 Mar 2024  ·  doi:10.1145/3626252.3630757
Charting is Never Exciting: Measuring Physician Time Use in Medical Dramas
Jackson KC, Miller KA, Hill SM, Johnson SS, Reimanis LA, Lofgren ET
medRxiv  ·  07 Mar 2024  ·  doi:10.1101/2024.03.01.24303412
Protocol for a parallel cluster randomized trial of a participatory tailored approach to reduce overuse of antibiotics at hospital discharge: the ROAD home trial.
Julia E Szymczak, Lindsay A Petty, Tejal N Gandhi, Robert A Neetz, Adam Hersh, …, Andrea T White, Jennifer K Horowitz, Scott A Flanders, Justin D Smith, Valerie M Vaughn
Implementation science : IS  ·  04 Mar 2024  ·  doi:10.1186/s13012-024-01348-w
Removal of Race and White Blood Cell Count in an Updated Pediatric Pneumonia Severity Model.
Laura F Sartori, Hui Nian, Yuwei Zhu, Jakobi Johnson, Justine Stassun, …, Donald H Arnold, James W Antoon, Andrew T Pavia, Carlos G Grijalva, Derek J Williams
Hospital pediatrics  ·  01 Mar 2024  ·  doi:10.1542/hpeds.2023-007571
Surgical-decision making in the setting of unsuspected N2 disease: a cost-effectiveness analysis.
Brian Mitzman, Thomas K Varghese, Wallace L Akerley, Richard E Nelson
Journal of thoracic disease  ·  26 Feb 2024  ·  doi:10.21037/jtd-23-1538
Healthcare Worker Staffing Ratios Affect Methicillin-ResistantStaphylococcus aureusAcquisition
Stephanie Sikavitsas Johnson, Matthew Steven Mietchen, Eric Thomas Lofgren
medRxiv  ·  15 Feb 2024  ·  doi:10.1101/2024.02.14.24302485
Circumstances of unintentional fall-related adult deaths: Utah, 2010-2020.
Yanling Shi, Erica Bennion, Chuck Ward, Leisha D Nolen
Injury prevention : journal of the International Society for Child and Adolescent Injury Prevention  ·  14 Feb 2024  ·  doi:10.1136/ip-2023-045063
The association of weight loss from anti-obesity medications or bariatric surgery and apnea-hypopnea index in obstructive sleep apnea.
Locke BW, Gomez-Lumbreras A, Tan CJ, Nonthasawadsri T, Veettil SK, Patikorn C, Chaiyakunapruk N, Chaiyakunapruk N
Obesity reviews : an official journal of the International Association for the Study of Obesity  ·  11 Feb 2024  ·  doi:10.1111/obr.13697
Impact of Shifting University Policies During the COVID-19 Pandemic on Self-Reported Employee Social Networks
Johnson SS, Jackson KC, Lofgren ET
medRxiv  ·  08 Feb 2024  ·  doi:10.1101/2024.02.08.24302489
Research agenda for antibiotic stewardship within the Veterans' Health Administration, 2024-2028.
Livorsi DJ, Branch-Elliman W, Drekonja D, Echevarria KL, Fitzpatrick MA, …, Stevens VW, Suda K, Trautner BW, Ward MJ, Jump RLP
Infection control and hospital epidemiology  ·  02 Feb 2024  ·  doi:10.1017/ice.2024.6
Temporary Financial Assistance Reduced The Probability Of Unstable Housing Among Veterans For More Than 1 Year.
Alec B Chapman, Daniel Scharfstein, Thomas H Byrne, Ann Elizabeth Montgomery, Ying Suo, …, Tania Velasquez, Warren Pettey, Rachel Dalrymple, Jack Tsai, Richard E Nelson
Health affairs (Project Hope)  ·  01 Feb 2024  ·  doi:10.1377/hlthaff.2023.00730
The impact of a statewide insulin copay cap policy for insured patients with diabetes in Utah.
Li N, Panchal R, Giannouchos T, Pan RJ, Nguyen D, …, Britton L, Chaiyakunapruk N, Biskupiak J, Wilson A, Brixner D
Journal of managed care & specialty pharmacy  ·  01 Feb 2024  ·  doi:10.18553/jmcp.2024.30.2.112
Global and regional burden of alcohol-associated liver disease and alcohol use disorder in the elderly.
Danpanichkul P, Suparan K, Ng CH, Dejvajara D, Kongarin S, …, Huang DQ, Díaz LA, Noureddin M, Arab JP, Wijarnpreecha K
JHEP reports : innovation in hepatology  ·  26 Jan 2024  ·  doi:10.1016/j.jhepr.2024.101020
Systematic review of the impact of health care expenditure on health outcome measures: implications for cost-effectiveness thresholds.
Gloria MAJ, Thavorncharoensap M, Chaikledkaew U, Youngkong S, Thakkinstian A, Chaiyakunapruk N, Ochalek J, Culyer AJ
Expert review of pharmacoeconomics & outcomes research  ·  25 Jan 2024  ·  doi:10.1080/14737167.2023.2296562
Clinical characteristics, management, outcome, and cost of stings and bites in patients admitted to a tertiary care teaching hospital.
Patil A, Chagi A, Poojari PG, Rashid M, Shivashankar KN, Thunga G, Nair S
Toxicology research  ·  13 Jan 2024  ·  doi:10.1093/toxres/tfae006
An economic evaluation of the expansion of electronic case reporting in an academic healthcare setting.
Hartsell J, Wilson FA, Shoaf K, Dunn A, Samore MH, Staes CJ
JAMIA open  ·  12 Jan 2024  ·  doi:10.1093/jamiaopen/ooad102
Unexpected Transmission Dynamics in a University Town: Lessons from COVID-19
Erin Clancey, Matthew S Mietchen, Corrin McMichael, Eric T Lofgren
Epidemiology (Cambridge, Mass.)  ·  11 Jan 2024  ·  doi:10.1101/2024.01.10.24301116
Using natural language processing to study homelessness longitudinally with electronic health record data subject to irregular observations.
Alec B Chapman, Daniel O Scharfstein, Ann Elizabeth Montgomery, Thomas Byrne, Ying Suo, Atim Effiong, Tania Velasquez, Warren Pettey, Richard E Nelson
AMIA ... Annual Symposium proceedings. AMIA Symposium  ·  11 Jan 2024  ·  pmid:38222404
Source of variation in cost of obstetrical care for low-risk nulliparas at term.
Brett D Einerson, Amanda A Allshouse, Grecio Sandoval, Richard E Nelson, M Sean Esplin, Michael Varner, William A Grobman, Torri D Metz, Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) Maternal-Fetal Medicine Units N…
American journal of obstetrics and gynecology  ·  06 Jan 2024  ·  doi:10.1016/j.ajog.2023.12.041
Investigating the impact of vaccine hesitancy on an emerging infectious disease: a mathematical and numerical analysis.
Hewage IM, Church KEM, Schwartz EJ
Journal of biological dynamics  ·  04 Jan 2024  ·  doi:10.1080/17513758.2023.2298988
A Linguistic Analysis Examining the Impact of COVID-19 on Pneumonia Diagnosis and Disease Models.
Chapman AB, Peterson KS, Rutter E, Nevers M, Ying J, Classen D, Jones M, Samore M, Jones B
Studies in health technology and informatics  ·  01 Jan 2024  ·  doi:10.3233/shti231236
Empirical antibiotics versus definitive antibiotics for Sepsis patients in Indonesia: A cost-effectiveness analysis
Rini Noviyani, Khanh N. C. Duong, Nhi T. N. Ngo, Sanjeewa Kularatna, Agata Widatama, I Gusti Ayu Made Srinadi
Journal of Applied Pharmaceutical Science  ·  01 Jan 2024  ·  doi:10.7324/japs.2024.195834
Impact of Reducing Time-to-Antibiotics on Sepsis Mortality, Antibiotic Use, and Adverse Events.
Donnelly JP, Seelye SM, Kipnis P, McGrath BM, Iwashyna TJ, Pogue J, Jones M, Liu VX, Prescott HC
Annals of the American Thoracic Society  ·  01 Jan 2024  ·  doi:10.1513/annalsats.202306-505oc
Parent and Clinician Views on Not Using Antibiotics for Mild Community-Acquired Pneumonia.
Julia E Szymczak, Ashley A Hayes, Patricia Labellarte, Julian Zighelboim, Amandeep Toor, Adam B Becker, Jeffrey S Gerber, Nathan Kuppermann, Todd A Florin
Pediatrics  ·  01 Jan 2024  ·  doi:10.1542/peds.2023-063782

2023

A cost-effectiveness analysis of national smoking cessation services among chronic obstructive pulmonary disease patients in Thailand.
Prasitwarachot R, Thavorn K, Patikorn C, Wattanasirichaigoon S, Rungruanghiranya S, Thongphiew A, Chaiyakunapruk N
Journal of medical economics  ·  30 Dec 2023  ·  doi:10.1080/13696998.2023.2269748
Cost-effectiveness analysis of HLA-B*13:01 screening for the prevention of co-trimoxazole-induced severe cutaneous adverse reactions among HIV-infected patients in Thailand
Warittakorn Kategeaw, Nontaya Nakkam, Sasisopin Kiertiburanakul, Chonlaphat Sukasem, Wichittra Tassaneeyakul, Nathorn Chaiyakunapruk
Journal of Medical Economics  ·  30 Dec 2023  ·  doi:10.1080/13696998.2023.2270868
PARP inhibitors in newly diagnosed or recurrent ovarian cancer maintenance therapy: evidence of efficacy and safety from randomized controlled trials
Phan Nguyen Nhu Quynh, Phuong Thi Lan Nguyen, Ha Thi Nguyen, Toi Lam Phung, Danielle TuongVy Nguyen, Khanh Ngoc Cong Duong
Biomedical Research and Therapy  ·  30 Dec 2023  ·  doi:10.15419/bmrat.v10i12.851
From Shadows to Spotlight: Exploring the Escalating Burden of Alcohol-Associated Liver Disease and Alcohol Use Disorder in Young Women.
Pojsakorn Danpanichkul, Cheng Han Ng, Mark Muthiah, Kanokphong Suparan, Darren Jun Hao Tan, …, Daniel Huang, Juan Pablo Arab, Mazen Noureddin, Jessica Leigh Mellinger, Karn Wijarnpreecha
The American journal of gastroenterology  ·  26 Dec 2023  ·  doi:10.14309/ajg.0000000000002642
Design Characterization for Black-and-White Textures in Visualization.
He T, Zhong Y, Isenberg P, Isenberg T
IEEE transactions on visualization and computer graphics  ·  25 Dec 2023  ·  doi:10.1109/tvcg.2023.3326941
Community Science Strategies Reveal Distributional Patterns of Treponeme-Associated Hoof Disease in Washington Elk (Cervus canadensis).
Winter SN, Fernández MDP, Clancey E, Garrison K, Mansfield K, Wild MA
Transboundary and emerging diseases  ·  14 Dec 2023  ·  doi:10.1155/2023/6685108
Efficacy of complement inhibitors for patients with paroxysmal nocturnal hemoglobinuria: a systematic review and meta-analysis.
Lee J, Lee H, Kim S, Suh HS
Therapeutic advances in hematology  ·  14 Dec 2023  ·  doi:10.1177/20406207231216080
Effect of Multidisciplinary Transitional Pain Service on Health Care Use and Costs Following Orthopedic Surgery.
Minkyoung Yoo, Michael J Buys, Richard E Nelson, Shardool Patel, Kimberlee M Bayless, Zachary Anderson, Julie B Hales, Benjamin S Brooke
Federal practitioner : for the health care professionals of the VA, DoD, and PHS  ·  12 Dec 2023  ·  doi:10.12788/fp.0438
Treatment effectiveness of antibiotic therapy in Veterans with multidrug-resistant Acinetobacter spp. bacteremia.
Vivo A, Fitzpatrick MA, Suda KJ, Wilson GM, Jones MM, Evans ME, Evans CT
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  12 Dec 2023  ·  doi:10.1017/ash.2023.500
Economic Burden of Mosquito-Borne Diseases in Low- and Middle-Income Countries: Protocol for a Systematic Review.
Chilakam N, Lakshminarayanan V, Keremutt S, Rajendran A, Thunga G, Poojari PG, Rashid M, Mukherjee N, Bhattacharya P, John D
JMIR research protocols  ·  11 Dec 2023  ·  doi:10.2196/50985
Previous Infection and Effectiveness of COVID-19 Vaccination in Middle- and High-School Students.
Olivia M Almendares, Jasmine D Ruffin, Abigail H Collingwood, Leisha D Nolen, William A Lanier, Sarah Rebecca Dash, Allison Avrich Ciesla, Ryan Wiegand, Jacqueline E Tate, Hannah L Kirking
Pediatrics  ·  01 Dec 2023  ·  doi:10.1542/peds.2023-062422
Assessing the Impact of Mask Mandates on SARS-CoV-2 Transmission: A Case Study of Utah
Horn AC, Shoemaker HE, Keegan LT
medRxiv  ·  13 Nov 2023  ·  doi:10.1101/2023.11.13.23298464
A New Paradigm for Pandemic Preparedness.
Nina H Fefferman, John S McAlister, Belinda S Akpa, Kelechi Akwataghibe, Fahim Tasneema Azad, …, Courtney L Schreiner, Elizabeth B Strand, Clifford S Swanson, Heather L Szabo-Rogers, Sadie J Ryan
Current epidemiology reports  ·  09 Nov 2023  ·  doi:10.1007/s40471-023-00336-w
Cost-effectiveness analysis of 7 treatments in metastatic hormone-sensitive prostate cancer: a public-payer perspective.
Minkyoung Yoo, Richard E Nelson, Benjamin Haaland, Maura Dougherty, Zachary A Cutshall, Rhea Kohli, Rylee Beckstead, Manish Kohli
Journal of the National Cancer Institute  ·  08 Nov 2023  ·  doi:10.1093/jnci/djad135
A comprehensive evaluation of life sciences data resources reveals significant accessibility barriers
Sehi L’Yi, Harrison G. Zhang, Andrew Patrick Mar, Thomas Chris Smits, Lawrence Weru, Sofía Rojas, Alexander Lex, Nils Gehlenborg
Preprint  ·  03 Nov 2023  ·  doi:10.31219/osf.io/5v98j_v1
Active Surveillance and Contact Precautions for Preventing Methicillin-Resistant Staphylococcus aureus Healthcare-Associated Infections During the COVID-19 Pandemic.
Evans ME, Simbartl LA, McCauley BP, Flarida LK, Jones MM, …, Perencevich EN, Rubin MA, Hicks NR, Kralovic SM, Roselle GA
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Nov 2023  ·  doi:10.1093/cid/ciad388
Integrating real‐world data in cost‐effectiveness analysis of universal HLA‐B*15:02 screening in Malaysia
Huey Yi Chong, Kheng-Seang Lim, Si-Lei Fong, Fatiha Hana Shabaruddin, Maznah Dahlui, Pauline Siew Mei Lai, Ching-Ching Ng, Nathorn Chaiyakunapruk
British Journal of Clinical Pharmacology  ·  01 Nov 2023  ·  doi:10.1111/bcp.15818
Genetic and functional basis of the reduction effect in bacteriophage ΦX174.
Bailes CL, Biggs KRH, Scott L, Wichman HA, Schwartz EJ
Virology  ·  27 Oct 2023  ·  doi:10.1016/j.virol.2023.109905
Temporary Financial Assistance for Housing Expenditures and Mortality and Suicide Outcomes Among US Veterans.
Nelson RE, Montgomery AE, Suo Y, Effiong A, Pettey W, Gelberg L, Kertesz SG, Tsai J, Byrne T
Journal of general internal medicine  ·  26 Oct 2023  ·  doi:10.1007/s11606-023-08337-7
Cost-Utility and Budget Impact Analyses of Oral Chemotherapy for Stage III Colorectal Cancer: Real-World Evidence after Policy Implementation in Thailand.
Phisalprapa P, Kositamongkol C, Korphaisarn K, Akewanlop C, Srimuninnimit V, Supakankunti S, Apiraksattayakul N, Chaiyakunapruk N
Cancers  ·  11 Oct 2023  ·  doi:10.3390/cancers15204930
The Surreptitious Burden of Nonalcoholic Fatty Liver Disease in the Elderly in the Asia-Pacific Region: An Insight from the Global Burden of Disease Study 2019.
Danpanichkul P, Kongarin S, Permpatdechakul S, Polpichai N, Duangsonk K, …, Chaiyakunapruk N, Mousa OY, Kim D, Chen VL, Wijarnpreecha K
Journal of clinical medicine  ·  11 Oct 2023  ·  doi:10.3390/jcm12206456
epiworldR: Fast Agent-Based Epi Models
Derek Meyer, George G Vega Yon
Journal of Open Source Software  ·  03 Oct 2023  ·  doi:10.21105/joss.05781
Simulation-based insights into community uniqueness within fragmented landscapes
Adriana Lozada, Casey C. Day, Erin L. Landguth, Angéline Bertin
Landscape Ecology  ·  01 Oct 2023  ·  doi:10.1007/s10980-023-01735-6
Scoping review of modelling studies assessing the impact of disruptions to essential health services during COVID-19.
Sajesh K Veettil, Luke Schwerer, Warittakorn Kategeaw, Damon Toth, Matthew H Samore, Raymond Hutubessy, Nathorn Chaiyakunapruk
BMJ open  ·  26 Sep 2023  ·  doi:10.1136/bmjopen-2023-071799
Disparities in COVID-19 related outcomes in the United States by race and ethnicity pre-vaccination era: an umbrella review of meta-analyses.
Duong KNC, Le LM, Veettil SK, Saidoung P, Wannaadisai W, …, Jones BE, Pavia AT, Jones MM, Samore MH, Chaiyakunapruk N
Frontiers in public health  ·  07 Sep 2023  ·  doi:10.3389/fpubh.2023.1206988
Analysis of seasonal variation of antibiotic prescribing for respiratory tract diagnoses in primary care practices.
Lacey Serletti, Lauren Dutcher, Kathleen O Degnan, Julia E Szymczak, Valerie Cluzet, Michael Z David, Leigh Cressman, Lindsay W Glassman, Keith W Hamilton, Centers for Disease Control and Prevention (CDC) Prevention Epicenters Program
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  05 Sep 2023  ·  doi:10.1017/ash.2023.418
A Statewide Quality Initiative to Reduce Unnecessary Antibiotic Treatment of Asymptomatic Bacteriuria.
Valerie M Vaughn, Ashwin Gupta, Lindsay A Petty, Anurag N Malani, Danielle Osterholzer, …, Tawny Czilok, Tanima Basu, Jennifer K Horowitz, Scott A Flanders, Tejal N Gandhi
JAMA internal medicine  ·  01 Sep 2023  ·  doi:10.1001/jamainternmed.2023.2749
Automatic Scatterplot Design Optimization for Clustering Identification.
Quadri GJ, Nieves JA, Wiernik BM, Rosen P
IEEE transactions on visualization and computer graphics  ·  01 Sep 2023  ·  doi:10.1109/tvcg.2022.3189883
Can’t You See I’m Getting Bored? The Social Context as a Moderator of Adolescent Leisure Boredom and Alcohol Use
Elizabeth Weybright, Jonathon J. Beckmeyer, Linda L. Caldwell, Lisa Wegner, Erica Doering, Edward A. Smith
Youth & Society  ·  01 Sep 2023  ·  doi:10.1177/0044118x221081152
Cost-Effectiveness Analysis of Pharmacist Adherence Interventions in People Living with HIV/AIDS in Pakistan.
Ahmed A, Dujaili JA, Chuah LH, Hashmi FK, Le LKD, Chatha ZF, Khanal S, Awaisu A, Chaiyakunapruk N
Healthcare (Basel, Switzerland)  ·  01 Sep 2023  ·  doi:10.3390/healthcare11172453
Development and validation of a standardized blood culture contamination definition and metric dashboard for a large health care system.
Hancock JA, Campbell S, Jones MM, Wang-Rodriguez J, VHA Microbiology SME Workgroup, Klutts JS
American journal of clinical pathology  ·  01 Sep 2023  ·  doi:10.1093/ajcp/aqad044
Exploring Annotation Strategies in Professional Visualizations: Insights from Prominent US News Portals
Dilshadur Rahman, Ghulam Jilani Quadri, Paul Rosen
Preprint  ·  30 Aug 2023  ·  doi:10.31219/osf.io/fd8zj
Validation of Childhood Pneumonia Prognostic Models for Use in Emergency Care Settings.
James W Antoon, Hui Nian, Krow Ampofo, Yuwei Zhu, Laura F Sartori, …, Donald H Arnold, Justine Stassun, Andrew T Pavia, Carlos G Grijalva, Derek J Williams
Journal of the Pediatric Infectious Diseases Society  ·  30 Aug 2023  ·  doi:10.1093/jpids/piad054
An innovative sequential mixed-methods approach to evaluating clinician acceptability during implementation of a standardized labor induction protocol.
Rebecca Feldman Hamm, Lisa D Levine, Julia E Szymczak, Samuel Parry, Sindhu K Srinivas, Rinad S Beidas
BMC medical research methodology  ·  29 Aug 2023  ·  doi:10.1186/s12874-023-02010-7
Corridor-based approach with spatial cross-validation reveals scale-dependent effects of geographic distance, human footprint and canopy cover on grizzly bear genetic connectivity.
Palm EC, Landguth EL, Holden ZA, Day CC, Lamb CT, …, Proctor MF, Sawaya MA, Stenhouse G, Whittington J, Zeller KA
Molecular ecology  ·  21 Aug 2023  ·  doi:10.1111/mec.17098
Choosing Veterans Affairs: Determinants of post-9/11 Veterans' enrollment in Veterans Affairs health care.
Megan E Vanneman, Matthew H Samore, Tianyu Zheng, Warren B P Pettey, Angela Fagerlin, Alex H S Harris
Medicine  ·  18 Aug 2023  ·  doi:10.1097/md.0000000000034814
reVISit: Supporting Scalable Evaluation of Interactive Visualizations
Yiren Ding, Jack Wilburn, Hilson Shrestha, Akim Ndlovu, Kiran Gadhave, Carolina Nobre, Alexander Lex, Lane Harrison
Preprint  ·  17 Aug 2023  ·  doi:10.31219/osf.io/hdzyv
The association of alcohol use and heavy drinking with subsequent handgun carrying among youth from rural areas.
Ellyson AM, Schleimer JP, Dalve K, Gause E, Weybright EH, Kuklinski MR, Oesterle S, Rowhani-Rahbar A
The Journal of rural health : official journal of the American Rural Health Association and the National Rural Health Care Association  ·  03 Aug 2023  ·  doi:10.1111/jrh.12789
CDMetaPOP 2: a multispecies, eco‐evolutionary simulation framework for landscape demogenetics and connectivity
Casey C. Day, Erin L. Landguth, Ryan K. Simmons, Andrew R. Bearlin
Ecography  ·  01 Aug 2023  ·  doi:10.1111/ecog.06566
Cost and Utilization Outcomes in Huntsman at Home, a Novel Oncology Hospital at Home Program.
Brock O’Neil, Kassandra Dindinger-Hill, Hailie Gill, Lorinda Coombs, Benjamin Haaland, …, Anne C Kirchhoff, Cornelia M Ulrich, Jared Huber, Anna Beck, Kathi Mooney
Journal of the American Medical Directors Association  ·  01 Aug 2023  ·  doi:10.1016/j.jamda.2023.06.030
Cost-effectiveness of HLA-B*58:01 testing to prevent Stevens-Johnson syndrome/toxic epidermal necrolysis in Vietnam.
Duong KN, Nguyen DV, Chaiyakunapruk N, Nelson RE, Malone DC
Pharmacogenomics  ·  01 Aug 2023  ·  doi:10.2217/pgs-2023-0095
Condition-Dependent and Dynamic Impacts of Indoor Masking Policies for Coronavirus Disease 2019 Mitigation: A Nationwide, Interrupted Time-Series Analysis.
Zeynep Ertem, Richard E Nelson, Elissa M Schechter-Perkins, Amera Al-Amery, Xilin Zhang, Westyn Branch-Elliman
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  26 Jul 2023  ·  doi:10.1093/cid/ciad115
Economic Burden of Mosquito-Borne Diseases in Low- and Middle-Income Countries: Protocol for a Systematic Review (Preprint)
Nagavalli Chilakam, Varsha Lakshminarayanan, Sushanth Keremutt, Ambigai Rajendran, Girish Thunga, Pooja Gopal Poojari, Muhammed Rashid, Nirmalya Mukherjee, Paramita Bhattacharya, Denny John
Preprint  ·  24 Jul 2023  ·  doi:10.2196/preprints.50985
Individual-Based Models for Incorporating Landscape Processes in the Conservation and Management of Aquatic Systems
Travis Seaborn, Casey C. Day, Stephanie J. Galla, Tomas O. Höök, Elizabeth Jossie, Erin L. Landguth, Rongsong Liu, Ryan K. Simmons
Current Landscape Ecology Reports  ·  22 Jul 2023  ·  doi:10.1007/s40823-023-00089-8
Sex difference in the discordance between Abbott Architect and EuroImmun serological assays.
Joel D Hartsell, Daniel T Leung, Yue Zhang, Julio C Delgado, Stephen C Alder, Matthew H Samore
PeerJ  ·  17 Jul 2023  ·  doi:10.7717/peerj.15247
Economic and Clinical Outcomes of Pediatric Patients Under Two With Respiratory Syncytial Virus Infection in Thailand: A Real-world Retrospective Cohort Study.
Tan CJ, Patikorn C, Techasaensiri C, Pattanaprateep O, Chaiyakunapruk N
The Pediatric infectious disease journal  ·  04 Jul 2023  ·  doi:10.1097/inf.0000000000004032
Health-related quality of life in breast cancer patients in low-and-middle-income countries in Asia: a systematic review.
Ngo NTN, Nguyen HT, Nguyen PTL, Vo TTT, Phung TL, Pham AG, Vo TV, Dang MTN, Nguyen Le Bao T, Duong KNC
Frontiers in global women's health  ·  14 Jun 2023  ·  doi:10.3389/fgwh.2023.1180383
Preimplantation genetic testing for sickle cell disease: a cost-effectiveness analysis.
Joshua C Combs, Maura Dougherty, Meghan U Yamasaki, Alan H DeCherney, Kate M Devine, Micah J Hill, Erin Rothwell, Jeanne E O’Brien, Richard E Nelson
F&S reports  ·  13 Jun 2023  ·  doi:10.1016/j.xfre.2023.06.001
The significance of APACHE II as a predictor of mortality in paraquat poisoning: A systematic review and meta-analysis.
Kaur H, Chandran VP, Rashid M, Kunhikatta V, Poojari PG, Bakkannavar SM, Balakrishnan JM, Thunga G
Journal of forensic and legal medicine  ·  04 Jun 2023  ·  doi:10.1016/j.jflm.2023.102548
Factors contributing to the adverse drug reactions associated with the dipeptidyl peptidase-4 (DPP-4) inhibitors: A scoping review.
Reghunath SR, Rashid M, Chandran VP, Thunga G, Shivashankar KN, Acharya LD
Diabetes & metabolic syndrome  ·  03 Jun 2023  ·  doi:10.1016/j.dsx.2023.102790
Evolutionary potential mitigates extinction risk under climate change in the endangered southwestern willow flycatcher.
Forester BR, Day CC, Ruegg K, Landguth EL
The Journal of heredity  ·  01 Jun 2023  ·  doi:10.1093/jhered/esac067
Ferret: Reviewing Tabular Datasets for Manipulation
Devin Lange, Shaurya Sahai, Jeff M. Phillips, Alexander Lex
Computer Graphics Forum  ·  01 Jun 2023  ·  doi:10.1111/cgf.14822
What a difference a year makes: Objective rest/activity patterns, circadian phase markers, and sleep quality before and during the COVID-19 pandemic.
Juan Esquivel-Mendoza, Helen J Burgess, Lisa H Gren, Kimberley Shoaf, Kelly G Baron
Sleep health  ·  01 Jun 2023  ·  doi:10.1016/j.sleh.2023.04.002
Hyperhydration to Improve Kidney Outcomes in Children with Shiga Toxin-Producing E. coli Infection: a multinational embedded cluster crossover randomized trial (the HIKO STEC trial).
Stephen B Freedman, David Schnadower, Myka Estes, T Charles Casper, Stuart L Goldstein, …, Benjamin S Wilfond, Melissa Metheney, Kadyn Kimball, Phillip I Tarr, Hyperhydration to Improve Kidney Outcomes in children with Shiga Toxin-producing E. Coli infection (HIKO-STEC) Study Te…
Trials  ·  27 May 2023  ·  doi:10.1186/s13063-023-07379-w
Child and family perceptions of satisfaction with neutropenia management in pediatric acute myeloid leukemia.
Julia E Szymczak, Kelly D Getz, Rachel Madding, Sydney Shuster, Catherine Aftandilian, …, Nobuko Hijiya, Amir Mian, Elizabeth Raetz, Brian T Fisher, Richard Aplenc
Pediatric blood & cancer  ·  17 May 2023  ·  doi:10.1002/pbc.30420
Characterizing spatiotemporal variation in transmission heterogeneity during the 2022 mpox outbreak in the USA
Love J, LaPrete CR, Sheets TR, Vega Yon GG, Thomas A, …, Keegan LT, Adler FR, Slayton RB, Spicknall IH, Toth DJ
medRxiv  ·  14 May 2023  ·  doi:10.1101/2023.05.10.23289580
Treatment of COVID-19 symptoms with over the counter (OTC) medicines used for treatment of common cold and flu.
Ronald Eccles, Guy Boivin, Benjamin J Cowling, Andrew Pavia, Rangaraj Selvarangan
Clinical infection in practice  ·  06 May 2023  ·  doi:10.1016/j.clinpr.2023.100230
Implementation of an Antibiotic Stewardship Initiative in a Large Urgent Care Network.
Edward Stenehjem, Anthony Wallin, Park Willis, Naresh Kumar, Allan M Seibert, …, Nora Fino, Matthew H Samore, Rajendu Srivastava, Lauri A Hicks, Adam L Hersh
JAMA network open  ·  01 May 2023  ·  doi:10.1001/jamanetworkopen.2023.13011
Teaching and learning strategies of evidence based medicine: A meta-synthesis of learners and instructors perspective
Viji Pulikkel Chandran, Athira Balakrishnan, Muhammed Rashid, Sohil Khan, Elsa Sanatombi Devi, Girish Pai Kulyadi, Sreedharan Nair, Girish Thunga
Clinical Epidemiology and Global Health  ·  01 May 2023  ·  doi:10.1016/j.cegh.2023.101280
Simulating plasticity as a framework for understanding habitat selection and its role in adaptive capacity and extinction risk through an expansion of CDMetaPOP.
Seaborn T, Landguth EL, Caudill CC
Molecular ecology resources  ·  20 Apr 2023  ·  doi:10.1111/1755-0998.13799
Misleading Beyond Visual Tricks: How People Actually Lie with Charts
Maxim Lisnic, Cole Polychronis, Alexander Lex, Marina Kogan
Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems  ·  19 Apr 2023  ·  doi:10.1145/3544548.3580910
Troubling Collaboration: Matters of Care for Visualization Design Study
Derya Akbaba, Devin Lange, Michael Correll, Alexander Lex, Miriah Meyer
Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems  ·  19 Apr 2023  ·  doi:10.1145/3544548.3581168
Antibiotic clinical decision support for pneumonia in the ED: A randomized trial.
Derek J Williams, Judith M Martin, Hui Nian, Asli O Weitkamp, Jason Slagle, …, Andrew T Pavia, Joshua C Smith, Matthew B Weinger, Yuwei Zhu, Carlos G Grijalva
Journal of hospital medicine  ·  12 Apr 2023  ·  doi:10.1002/jhm.13101
Evaluating the evolutionary mechanisms maintaining alternative mating strategies in a simulated bull trout ( Salvelinus confluentus ) population.
Bernos TA, Chang SL, Giglio RM, Davenport K, Fisher J, …, Bearlin A, Simmons R, Fortin MJ, Day CC, Landguth EL
Ecology and evolution  ·  07 Apr 2023  ·  doi:10.1002/ece3.9965
Cost-effectiveness analysis of the SMART quit clinic program in smokers with cardiovascular disease in Thailand.
Grant A, Tan CJ, Wattanasirichaigoon S, Rungruanghiranya S, Thongphiew A, Thavorn K, Chaiyakunapruk N
Tobacco induced diseases  ·  05 Apr 2023  ·  doi:10.18332/tid/161024
Evaluation of mortality risk after COVID-19 vaccination, Utah 2021.
Jessica R Payne, Srimoyee Bose, Rachel W Kubiak, Leisha D Nolen
Vaccine  ·  05 Apr 2023  ·  doi:10.1016/j.vaccine.2023.03.072
Comparative effectiveness of psychosocial interventions in adults with harmful use of alcohol: a systematic review and network meta-analysis.
Tan CJ, Shufelt T, Behan E, Chantara J, Koomsri C, Gordon AJ, Chaiyakunapruk N, Dhippayom T
Addiction (Abingdon, England)  ·  04 Apr 2023  ·  doi:10.1111/add.16187
Association of hemoglobin A1c stability with mortality and diabetes complications in older adults with diabetes.
Paul R Conlin, Libin Zhang, Donglin Li, Richard E Nelson, Julia C Prentice, David C Mohr
BMJ open diabetes research & care  ·  01 Apr 2023  ·  doi:10.1136/bmjdrc-2022-003211
Hospital admission decisions for older Veterans with community-onset pneumonia: An analysis of 118 U.S. Veterans Affairs Medical Centers.
Barbara E Jones, Jian Ying, McKenna Nevers, Elizabeth D Rutter, Alec B Chapman, Rachel Brenner, Matthew H Samore, Tom Greene
Academic emergency medicine : official journal of the Society for Academic Emergency Medicine  ·  01 Apr 2023  ·  doi:10.1111/acem.14655
Visualizing Interaction Networks and Evidence in Biomedical Corpora
Enrique Noriega-Atala, Md. Rahat-Uz-Zaman, Ruchika Bhat, Mladen Jergovic, Stephen G. Kobourov, Janko Nikolich-Zugich
2023 IEEE 16th Pacific Visualization Symposium (PacificVis)  ·  01 Apr 2023  ·  doi:10.1109/pacificvis56936.2023.00012
A qualitative evaluation of frontline clinician perspectives toward antibiotic stewardship programs.
Maria Tjilos, Mari-Lynn Drainoni, Shana A B Burrowes, Jorie M Butler, Laura J Damschroder, …, Matthew H Samore, Jincheng Shen, Edward A Stenehjem, Yue Zhang, Tamar F Barlam
Infection control and hospital epidemiology  ·  29 Mar 2023  ·  doi:10.1017/ice.2023.35
Assessing Pathogen Transmission Opportunities: Variation in Nursing Home Staff-Resident Interactions.
Nai-Chung Nelson Chang, Molly Leecaster, Scott Fridkin, Will Dube, Morgan Katz, …, Rachel B Slayton, Nicola D Thompson, Kristina Stratford, Matthew Samore, Lindsay D Visnovsky
Journal of the American Medical Directors Association  ·  27 Mar 2023  ·  doi:10.1016/j.jamda.2023.02.018
Electronic surveillance criteria for non-ventilator-associated hospital-acquired pneumonia: Assessment of reliability and validity.
Sarah E Stern, Matthew A Christensen, McKenna R Nevers, Jian Ying, Caroline McKenna, Shannon Munro, Chanu Rhee, Matthew H Samore, Michael Klompas, Barbara E Jones
Infection control and hospital epidemiology  ·  15 Mar 2023  ·  doi:10.1017/ice.2022.302
Equity-Informative Economic Evaluations of Vaccines: A Systematic Literature Review.
Patikorn C, Cho JY, Lambach P, Hutubessy R, Chaiyakunapruk N
Vaccines  ·  09 Mar 2023  ·  doi:10.3390/vaccines11030622
Implementation challenges and real-world impacts of switching pediatric vaccines: A global systematic literature review.
Patikorn C, Kategeaw W, Perdrizet J, Li X, Chaiyakunapruk N
Human vaccines & immunotherapeutics  ·  07 Mar 2023  ·  doi:10.1080/21645515.2023.2177459
Key Factors and Parameter Ranges for Immune Control of Equine Infectious Anemia Virus Infection.
Hull-Nye D, Meadows T, Smith SR, Schwartz EJ
Viruses  ·  06 Mar 2023  ·  doi:10.3390/v15030691
A randomized controlled trial of gamification, financial incentives, or both to increase physical activity among patients with elevated risk for cardiovascular disease: rationale and design of the be active study.
Alexander C Fanaroff, Mitesh S Patel, Neel Chokshi, Samantha Coratti, David Farraday, …, Jingsan Zhu, Julia E Szymczak, Louise B Russell, Dylan S Small, Kevin G M Volpp
American heart journal  ·  02 Mar 2023  ·  doi:10.1016/j.ahj.2023.02.014
What Is the Active Prevalence of COVID-19?
Mu-Jeung Yang, Marinho Bertanha, Nathan Seegert, Maclean Gaulin, Adam Looney, Brian Orleans, Andrew T. Pavia, Kristina Stratford, Matthew Samore, Steven Alder
The Review of Economics and Statistics  ·  01 Mar 2023  ·  doi:10.1162/rest_a_01302
Impact of Rapid Molecular Multiplex Gastrointestinal Pathogen Testing in Management of Children during a Shigella Outbreak.
N Kanwar, J Jackson, T Bardsley, A Pavia, K M Bourzac, K Holmberg, R Selvarangan
Journal of clinical microbiology  ·  28 Feb 2023  ·  doi:10.1128/jcm.01652-22
Integrating Real-World Evidence in Economic Evaluation of Oral Anticoagulants for Stroke Prevention in Non-valvular Atrial Fibrillation in a Developing Country.
M Sakil Syeed, Teerawat Nonthasawadsri, Richard E Nelson, Nathorn Chaiyakunapruk, Surakit Nathisuwan
American journal of cardiovascular drugs : drugs, devices, and other interventions  ·  03 Feb 2023  ·  doi:10.1007/s40256-023-00570-z
Investigation of SARS-CoV-2 Transmission in The Tabernacle Choir at Temple Square in the Context of Prevention Protocols, Utah, September-November 2021.
William A Lanier, David K Palmer, D Keith Willmore, Kelly F Oakeson, Erin L Young, Leisha D Nolen
Public health reports (Washington, D.C. : 1974)  ·  03 Feb 2023  ·  doi:10.1177/00333549231152198
Association of Radiology Findings with Etiology of Community Acquired Pneumonia among Children.
Sandra R Arnold, Seema Jain, David Dansie, Herman Kan, Derek J Williams, …, Andrew T Pavia, Kathryn M Edwards, Vikki G Nolan, Jonathan A McCullers, Robert A Kaufman
The Journal of pediatrics  ·  02 Feb 2023  ·  doi:10.1016/j.jpeds.2023.01.010
Are Staphylococcus aureus Carrier Types Evidence of Population Heterogeneity?
Beams A, Keegan LT, Adler FR, Samore MH, Khader K, Toth DJA
American journal of epidemiology  ·  01 Feb 2023  ·  doi:10.1093/aje/kwac201
Understanding patient cost-sharing thresholds for diabetes treatment attributes via a discrete choice experiment.
Panchal R, Nguyen D, Ghule P, Li N, Giannouchos T, …, Britton L, Nohavec R, Slager S, Ngorsuraches S, Brixner D
Journal of managed care & specialty pharmacy  ·  01 Feb 2023  ·  doi:10.18553/jmcp.2023.29.2.139
Impact of COVID-19 pandemic on medicine supply chain for patients with chronic diseases: Experiences of the community pharmacists.
Ramakrishnan M, Poojari PG, Rashid M, Nair S, Pulikkel Chandran V, Thunga G
Clinical epidemiology and global health  ·  27 Jan 2023  ·  doi:10.1016/j.cegh.2023.101243
Comparison of diagnostic accuracy for diabetes diagnosis: A systematic review and network meta-analysis.
Duong KNC, Tan CJ, Rattanasiri S, Thakkinstian A, Anothaisintawee T, Chaiyakunapruk N
Frontiers in medicine  ·  24 Jan 2023  ·  doi:10.3389/fmed.2023.1016381
Handwritten Numeral Recognition Integrating Start–End Points Measure with Convolutional Neural Network
M. A. H. Akhand, Md. Rahat-Uz-Zaman, Shadmaan Hye, Md Abdus Samad Kamal
Electronics  ·  16 Jan 2023  ·  doi:10.3390/electronics12020472
Cost-Effectiveness Analysis of Six Immunotherapy-Based Regimens and Sunitinib in Metastatic Renal Cell Carcinoma: A Public Payer Perspective.
Minkyoung Yoo, Richard E Nelson, Zachary Cutshall, Maura Dougherty, Manish Kohli
JCO oncology practice  ·  04 Jan 2023  ·  doi:10.1200/op.22.00447
Artificial intelligence in neglected tropical diseases
Girish Thunga, Sohil Khan, Pooja Gopal Poojari, Asha K. Rajan, Muhammed Rashid, Harsimran Kaur, Viji Pulikkel Chandran
Artificial Intelligence in Clinical Practice how AI Technologies Impact Medical Research and Clinics  ·  01 Jan 2023  ·  doi:10.1016/b978-0-443-15688-5.00029-2
Impact of Diabetes in COVID-19 Associated Mucormycosis and its Management: A Non-Systematic Literature Review.
Rashid M, Rajan AK, Thunga G, Shanbhag V, Nair S
Current diabetes reviews  ·  01 Jan 2023  ·  doi:10.2174/1573399818666220224123525

2022

Characterizing attributes of innovation of technologies for healthcare: a systematic review.
Syeed MS, Poudel N, Ngorsuraches S, Veettil SK, Chaiyakunapruk N
Journal of medical economics  ·  30 Dec 2022  ·  doi:10.1080/13696998.2022.2140591
Direction-optimizing Label Propagation Framework for Structure Detection in Graphs: Design, Implementation, and Experimental Analysis
Xu Liu, Andrew Lumsdaine, Mahantesh Halappanavar, Kevin Barker, Assefaw Gebremedhin
ACM Journal of Experimental Algorithmics  ·  30 Dec 2022  ·  doi:10.1145/3564593
Global article collection: essential reads from around the world
Mihajlo Jakovljevic, Chia Jie Tan, Nathorn Chaiyakunapruk, Guilherme Silva Julian, Kei Long Cheung, Mickael Hiligsmann, Brian Godman, Sylvia Opanga, Paul A Scuffham, Michael Gregg
Journal of Medical Economics  ·  30 Dec 2022  ·  doi:10.1080/13696998.2022.2087960
Incremental net monetary benefit of herpes zoster vaccination: a systematic review and meta-analysis of cost-effectiveness evidence
Sariya Udayachalerm, Maranda G Renouard, Thunyarat Anothaisintawee, Ammarin Thakkinstian, Sajesh K Veettil, Nathorn Chaiyakunapruk
Journal of Medical Economics  ·  30 Dec 2022  ·  doi:10.1080/13696998.2021.2008195
Measurement and valuation of the attributes of innovation of healthcare technologies: a systematic review.
Syeed MS, Poudel N, Ngorsuraches S, Diaz J, Chaiyakunapruk N
Journal of medical economics  ·  30 Dec 2022  ·  doi:10.1080/13696998.2022.2143170
Methodological similarities and variations among EQ-5D-5L value set studies: a systematic review
N Poudel, S M Fahim, J Qian, K Garza, N Chaiyakunapruk, S Ngorsuraches
Journal of Medical Economics  ·  30 Dec 2022  ·  doi:10.1080/13696998.2022.2066441
Predictors of homeless service utilization and stable housing status among Veterans receiving services from a nationwide homelessness prevention and rapid rehousing program.
Thomas Byrne, Ann Elizabeth Montgomery, Alec B Chapman, Warren Pettey, Atim Effiong, Ying Suo, Tania Velasquez, Richard E Nelson
Evaluation and program planning  ·  26 Dec 2022  ·  doi:10.1016/j.evalprogplan.2022.102223
Examining the clinical impact of rapid multiplex polymerase chain reaction-based diagnostic testing for bloodstream infections in a national cohort of the Veterans Health Administration.
Nicholas S Britt, Karim Khader, Tao He, Tina M Willson, Atim Effiong, Tristan T Timbrook, Emily M Potter, Thomas P Lodise
Pharmacotherapy  ·  21 Dec 2022  ·  doi:10.1002/phar.2747
Start-End Writing Integration with Convolutional Neural Network for Bengali Handwritten Numeral Recognition
Md. Rahat-Uz-Zaman, Shadmaan Hye, M. A. H. Akhand
2022 12th International Conference on Electrical and Computer Engineering (ICECE)  ·  21 Dec 2022  ·  doi:10.1109/icece57408.2022.10088628
Systematic review and meta-analysis of global prevalence of neurotoxic and hemotoxic snakebite envenomation.
Suhita R, Begum I, Rashid M, Chandran VP, Shastri SA, Kantamneni R, Rajan AK, Thunga G
Eastern Mediterranean health journal = La revue de sante de la Mediterranee orientale = al-Majallah al-sihhiyah li-sharq al-mutawassit  ·  21 Dec 2022  ·  doi:10.26719/emhj.22.090
Data Hunches: Incorporating Personal Knowledge into Visualizations.
Lin H, Akbaba D, Meyer M, Lex A
IEEE transactions on visualization and computer graphics  ·  20 Dec 2022  ·  doi:10.1109/tvcg.2022.3209451
Characterizing health services interventions for evidence syntheses by using the theme, intensity, provider/platform (TIP) framework.
Dhippayom T, Saldanha IJ, Chaiyakunapruk N, Devine B
Journal of evidence-based medicine  ·  18 Dec 2022  ·  doi:10.1111/jebm.12511
Revisiting classical SIR modelling in light of the COVID-19 pandemic.
Kalachev L, Landguth EL, Graham J
Infectious Disease Modelling  ·  16 Dec 2022  ·  doi:10.1016/j.idm.2022.12.002
432. Ward-level Variation in Transmission of MRSA in Veterans Affairs Hospitals
Karim Khader, Vanessa W Stevens, Alun Thomas, Damon Toth, Lindsay T Keegan, Michael Rubin, Matthew H Samore
Open Forum Infectious Diseases  ·  15 Dec 2022  ·  doi:10.1093/ofid/ofac492.507
CP‐SyNet: A tool for generating customised cyber‐power synthetic network for distribution systems with distributed energy resources
Lusha Wang, James Halvorsen, Sanjeev Pannala, Anurag Srivastava, Assefaw H. Gebremedhin, Noel N. Schulz
IET Smart Grid  ·  01 Dec 2022  ·  doi:10.1049/stg2.12088
Doris Duke Charitable Foundation Fund to Retain Clinical Scientists: innovating support for early-career family caregivers.
Reshma Jagsi, T DeLene Beeland, Kevin Sia, Lauren A Szczygiel, Matthew R Allen, …, Brownsyne Tucker Edmonds, Anna Volerman, Sandra Laney, Carrie Patton, Sindy Escobar Alvarez
The Journal of clinical investigation  ·  01 Dec 2022  ·  doi:10.1172/jci166075
Lack of correlation between standardized antimicrobial administration ratios (SAARs) and healthcare-facility-onset Clostridioides difficile infection rates in Veterans Affairs medical facilities.
Evans ME, Jones MM, Davis KW, Lane MT, Simbartl LA, McCauley BP, Gauldin N, Roselle GA
Infection control and hospital epidemiology  ·  01 Dec 2022  ·  doi:10.1017/ice.2022.281
Conflicting HIV/AIDS Sex Education Policies and Mixed Messaging among Educators and Students in the Lower Manya Krobo Municipality, Ghana.
Benedict Ocran, Sharon Talboys, Kimberley Shoaf
International journal of environmental research and public health  ·  22 Nov 2022  ·  doi:10.3390/ijerph192315487
Contributions of cancer treatment, comorbidities, and obesity to aging-related disease risks among non-Hodgkin lymphoma survivors.
Krista Ocier, Sarah Abdelaziz, Seungmin Kim, Kerry Rowe, John Snyder, …, Christy Porucznik, Kimberley Shoaf, Joseph Stanford, Catherine Lee, Mia Hashibe
Cancer causes & control : CCC  ·  22 Nov 2022  ·  doi:10.1007/s10552-022-01652-0
Revisiting the Question of Fan Attendance at Professional Sporting Events
Stephanie S. Johnson, Eric T. Lofgren
JAMA Network Open  ·  18 Nov 2022  ·  doi:10.1001/jamanetworkopen.2022.40142
Minimizing Costs for Dorsal Wrist Ganglion Treatment: A Cost-Minimization Analysis.
Andrew E Federer, Minkyoung Yoo, Andrew S Stephens, Richard E Nelson, Jesse N Steadman, Andrew R Tyser, Nikolas H Kazmers
The Journal of hand surgery  ·  17 Nov 2022  ·  doi:10.1016/j.jhsa.2022.09.002
Assessment of the real-world impact of the Thai smoking cessation programme on clinical outcomes: protocol for a multicentre prospective observational study.
Chaisai C, Chaiyakunapruk N, Thavorn K, Wattanasirichaigoon S, Rungruanghiranya S, Thongphiew A, Lee SWH
Primary health care research & development  ·  10 Nov 2022  ·  doi:10.1017/s1463423622000548
College students’ perceptions of healthy and unhealthy leisure: associations with leisure behaviour
Jennifer P. Agans, Steven Hanna, Elizabeth H. Weybright, Julie S. Son
Leisure Studies  ·  02 Nov 2022  ·  doi:10.1080/02614367.2022.2055773
Discrete Exponential-Family Models for Multivariate Binary Outcomes
George G. Vega Yon, Mary Jo Pugh, Thomas W. Valente
arXiv  ·  01 Nov 2022  ·  doi:10.48550/arxiv.2211.00627
A Cluster Randomized Trial of a Family Health History Platform to Identify and Manage Patients at Increased Risk for Colorectal Cancer.
Corrine I Voils, Cynthia J Coffman, R Ryanne Wu, Janet M Grubber, Deborah A Fisher, …, Dawn Provenzale, Richard E Nelson, Elizabeth Hauser, Lori A Orlando, Karen M Goldstein
Journal of general internal medicine  ·  28 Oct 2022  ·  doi:10.1007/s11606-022-07787-9
Proton pump inhibitors use and risk of inflammatory bowel diseases: a meta-analysis of observational studies.
Shastri SA, Kantamneni R, Rashid M, Chandran VP, Suhita R, Begum I, Nair S, Thunga G
Medicine and pharmacy reports  ·  27 Oct 2022  ·  doi:10.15386/mpr-2259
A Survey of Perception-Based Visualization Studies by Task.
Quadri GJ, Rosen P
IEEE transactions on visualization and computer graphics  ·  26 Oct 2022  ·  doi:10.1109/tvcg.2021.3098240
Comparative effectiveness of antibiotic therapy for carbapenem-resistant Enterobacterales (CRE) bloodstream infections in hospitalized US veterans.
Wilson GM, Fitzpatrick MA, Suda KJ, Smith BM, Gonzalez B, Jones M, Schweizer ML, Evans M, Evans CT
JAC-antimicrobial resistance  ·  26 Oct 2022  ·  doi:10.1093/jacamr/dlac106
How Does the Effect of the Comprehensive Care for Joint Replacement Model Vary Based on Surgical Volume and Costs of Care?
Hyunkyu Ko, Brook I Martin, Richard E Nelson, Christopher E Pelt
Medical care  ·  12 Oct 2022  ·  doi:10.1097/mlr.0000000000001785
Outpatient treatment and clinical outcomes of bacteriuria in veterans: A retrospective cohort analysis.
Rovelsky SA, Vu M, Barrett AK, Bukowski K, Wei X, …, Echevarria K, Suda KJ, Cunningham F, Madaras-Kelly KJ, UTI Management Improvement Group
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  12 Oct 2022  ·  doi:10.1017/ash.2022.285
Comparing two implementation strategies for implementing and sustaining a case management practice serving homeless-experienced veterans: a protocol for a type 3 hybrid cluster-randomized trial.
Sonya Gabrielian, Erin P Finley, David A Ganz, Jenny M Barnard, Nicholas J Jackson, Ann Elizabeth Montgomery, Richard E Nelson, Kristina M Cordasco
Implementation science : IS  ·  03 Oct 2022  ·  doi:10.1186/s13012-022-01236-1
Criminal legal involvement among recently separated veterans: Findings from the LIMBIC study.
Elbogen EB, Amuan M, Kennedy E, Blakey SM, Graziano RC, …, Tsai J, Nelson RE, Vanneman ME, Jones AL, Pugh MJ
Law and human behavior  ·  01 Oct 2022  ·  doi:10.1037/lhb0000497
Improving Antibiotic Stewardship for Diarrheal Disease With Probability-Based Electronic Clinical Decision Support: A Randomized Crossover Trial.
Eric J Nelson, Ashraful I Khan, Adama Mamby Keita, Ben J Brintz, Youssouf Keita, …, Dennis L Chao, Karen L Kotloff, Firdausi Qadri, Samba O Sow, Daniel T Leung
JAMA pediatrics  ·  01 Oct 2022  ·  doi:10.1001/jamapediatrics.2022.2535
Quantifying the breadth of antibiotic exposure in sepsis and suspected infection using spectrum scores.
Smith JT, Manickam RN, Barreda F, Greene JD, Bhimarao M, Pogue J, Jones M, Myers L, Prescott HC, Liu VX
Medicine  ·  01 Oct 2022  ·  doi:10.1097/md.0000000000030245
Clinical Decision Support Systems to Reduce Unnecessary Clostridioides difficile Testing Across Multiple Hospitals.
Clare Rock, Oluchi Abosi, Susan Bleasdale, Erin Colligan, Daniel J Diekema, …, Sara Pau, Jorge L Salinas, Emily Spivak, Eric Wenzler, Sara E Cosgrove
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  30 Sep 2022  ·  doi:10.1093/cid/ciac074
Estimating economic and disease burden of snakebite in ASEAN countries using a decision analytic model.
Patikorn C, Blessmann J, Nwe MT, Tiglao PJG, Vasaruchapong T, …, Zainal Abidin SA, Ismail AK, Othman I, Taychakhoonavudh S, Chaiyakunapruk N
PLoS neglected tropical diseases  ·  28 Sep 2022  ·  doi:10.1371/journal.pntd.0010775
Role of human leukocyte antigen in anti-epileptic drugs-induced Stevens-Johnson Syndrome/toxic epidermal necrolysis: A meta-analysis.
Rashid M, Rajan AK, Chhabra M, Kashyap A, Chandran VP, Venkataraman R, Nair S, Thunga G
Seizure  ·  17 Sep 2022  ·  doi:10.1016/j.seizure.2022.09.011
A Qualitative Evaluation and Taxonomy of Student Annotations on Bar Charts
Dilshadur Rahman, Ghulam Jilani Quadri, Paul Rosen
Preprint  ·  12 Sep 2022  ·  doi:10.31219/osf.io/e5vfy
Infectious Disease Consults of Pseudomonas aeruginosa Bloodstream Infection and Impact on Health Outcomes.
Ramanathan S, Albarillo FS, Fitzpatrick MA, Suda KJ, Poggensee L, …, Safdar N, Pfeiffer C, Smith B, Wilson G, Evans CT
Open forum infectious diseases  ·  09 Sep 2022  ·  doi:10.1093/ofid/ofac456
A flexible framework for visualizing and exploring patient misdiagnosis over time.
Widanagamaachchi W, Peterson K, Chapman A, Classen D, Jones M
Journal of biomedical informatics  ·  02 Sep 2022  ·  doi:10.1016/j.jbi.2022.104178
Correction to: Consolidated Health Economic Evaluation Reporting Standards 2022 (CHEERS 2022) Statement: Updated Reporting Guidance for Health Economic Evaluations.
Husereau D, Drummond M, Augustovski F, de Bekker-Grob E, Briggs AH, …, Mauskopf J, Mullins CD, Petrou S, Pwu RF, Staniszewska S
Applied health economics and health policy  ·  01 Sep 2022  ·  doi:10.1007/s40258-022-00743-y
Estimate of undetected severe acute respiratory coronavirus virus 2 (SARS-CoV-2) infection in acute-care hospital settings using an individual-based microsimulation model.
Jones K, Hadley E, Preiss S, Lofgren ET, Rice DP, Stoner MCD, Rhea S, Adams JW
Infection control and hospital epidemiology  ·  01 Sep 2022  ·  doi:10.1017/ice.2022.174
Red Blood Cell Distribution Width and Pediatric Community-Acquired Pneumonia Disease Severity.
Jaclyn Lee, Yuwei Zhu, Derek J Williams, Wesley H Self, Sandra R Arnold, …, Andrew T Pavia, Evan J Anderson, Seema Jain, Kathryn M Edwards, Carlos G Grijalva
Hospital pediatrics  ·  01 Sep 2022  ·  doi:10.1542/hpeds.2022-006539
Standard Vocabularies to Improve Machine Learning Model Transferability With Electronic Health Record Data: Retrospective Cohort Study Using Health Care-Associated Infection.
Kiser AC, Eilbeck K, Ferraro JP, Skarda DE, Samore MH, Bucher B
JMIR medical informatics  ·  30 Aug 2022  ·  doi:10.2196/39057
Lack of Association Between Pandemic School Mode Policy and Pediatric Body Mass Index Percentile Over Time.
Lloyd Fisher, Richard E Nelson, Zeynep Ertem, Elissa M Schechter-Perkins, Emily Oster, Westyn Branch-Elliman
Childhood obesity (Print)  ·  24 Aug 2022  ·  doi:10.1089/chi.2022.0131
Integrating tick density and park visitor behaviors to assess the risk of tick exposure in urban parks on Staten Island, New York.
Erin Hassett, Maria Diuk-Wasser, Laura Harrington, Pilar Fernandez
BMC public health  ·  23 Aug 2022  ·  doi:10.1186/s12889-022-13989-x
Difficulties with Emotion Regulation during COVID-19 and Associations with Boredom in College Students.
Weybright EH, Doering EL, Perone S
Behavioral sciences (Basel, Switzerland)  ·  20 Aug 2022  ·  doi:10.3390/bs12080296
Implementation and outcomes of a clinician-directed intervention to improve antibiotic prescribing for acute respiratory tract infections within the Veterans' Affairs Healthcare System.
Karl J Madaras-Kelly, Suzette A Rovelsky, Robert A McKie, McKenna R Nevers, Jian Ying, Benjamin A Haaland, Chad L Kay, Melissa L Christopher, Lauri A Hicks, Mathew H Samore
Infection control and hospital epidemiology  ·  15 Aug 2022  ·  doi:10.1017/ice.2022.182
Sound and Silence: The Effects of Environmental Conditions on State Boredom in an Online Study during the COVID-19 Pandemic.
Anderson AJ, McMeen CE, Perone S, Weybright EH
Behavioral sciences (Basel, Switzerland)  ·  12 Aug 2022  ·  doi:10.3390/bs12080282
Daily 1 km terrain resolving maps of surface fine particulate matter for the western United States 2003-2021.
Swanson A, Holden ZA, Graham J, Warren DA, Noonan C, Landguth E
Scientific data  ·  02 Aug 2022  ·  doi:10.1038/s41597-022-01488-y
Economic evaluation of direct oral anticoagulants (DOACs) versus vitamin K antagonists (VKAs) for stroke prevention in patients with atrial fibrillation: a systematic review and meta-analysis
Rini Noviyani, Sitaporn Youngkong, Surakit Nathisuwan, Bhavani Shankara Bagepally, Usa Chaikledkaew, Nathorn Chaiyakunapruk, Gareth McKay, Piyamitr Sritara, John Attia, Ammarin Thakkinstian
BMJ Evidence-Based Medicine  ·  01 Aug 2022  ·  doi:10.1136/bmjebm-2020-111634
Optimal Urine Culture Diagnostic Stewardship Practice-Results from an Expert Modified-Delphi Procedure.
Claeys KC, Trautner BW, Leekha S, Coffey KC, Crnich CJ, …, Spivak ES, Suda KJ, Taylor JM, Rhee C, Morgan DJ
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Aug 2022  ·  doi:10.1093/cid/ciab987
Temporal Trends in Antimicrobial Prescribing During Hospitalization for Potential Infection and Sepsis.
Prescott HC, Seelye S, Wang XQ, Hogan CK, Smith JT, …, Donnelly JP, Pogue JM, Iwashyna TJ, Jones MM, Liu VX
JAMA internal medicine  ·  01 Aug 2022  ·  doi:10.1001/jamainternmed.2022.2291
Sequence Similarity Network Analysis Provides Insight into the Temporal and Geographical Distribution of Mutations in SARS-CoV-2 Spike Protein.
Patil SS, Catanese HN, Brayton KA, Lofgren ET, Gebremedhin AH
Viruses  ·  29 Jul 2022  ·  doi:10.3390/v14081672
Artificial intelligence in acute respiratory distress syndrome: A systematic review.
Rashid M, Ramakrishnan M, Chandran VP, Nandish S, Nair S, Shanbhag V, Thunga G
Artificial intelligence in medicine  ·  19 Jul 2022  ·  doi:10.1016/j.artmed.2022.102361
Combining cost-effectiveness results into a single measurement: What is the value?: Authors response.
Dilokthornsakul P, Veettil SK, Lan LM, Thakkinstian A, Hutubessy R, Lambach P, Chaiyakunapruk N
EClinicalMedicine  ·  15 Jul 2022  ·  doi:10.1016/j.eclinm.2022.101565
Potential changes in vaccine access and policy landscape in Thailand post COVID-19 pandemic.
Kategeaw W, Youngkong S, Taychakhoonavudh S, Techathawat S, Chaiyakunapruk N
Human vaccines & immunotherapeutics  ·  11 Jul 2022  ·  doi:10.1080/21645515.2022.2095823
Association of hemoglobin A1c time in range with risk for diabetes complications.
David C Mohr, Libin Zhang, Julia C Prentice, Richard E Nelson, Donglin Li, Erin Pleasants, Paul R Conlin
BMJ open diabetes research & care  ·  01 Jul 2022  ·  doi:10.1136/bmjdrc-2021-002738
Comparative effects of music interventions on depression in older adults: A systematic review and network meta-analysis.
Dhippayom T, Saensook T, Promkhatja N, Teaktong T, Chaiyakunapruk N, Devine B
EClinicalMedicine  ·  01 Jul 2022  ·  doi:10.1016/j.eclinm.2022.101509
Effects of pharmacist interventions on cardiovascular risk factors and outcomes: An umbrella review of meta‐analysis of randomized controlled trials
Wipharak Rattanavipanon, Thanaputt Chaiyasothi, Punyawee Puchsaka, Rachata Mungkornkaew, Surakit Nathisuwan, Sajesh K Veettil, Nathorn Chaiyakunapruk
British Journal of Clinical Pharmacology  ·  01 Jul 2022  ·  doi:10.1111/bcp.15279
Efficacy and safety of saroglitazar for the management of dyslipidemia: A systematic review and meta-analysis of interventional studies.
Chhabra M, Vidyasagar K, Gudi SK, Sharma J, Sharma R, Rashid M
PloS one  ·  01 Jul 2022  ·  doi:10.1371/journal.pone.0269531
Estimated Impact of the US COVID-19 Vaccination Campaign-Getting to 94% of Deaths Prevented.
Malia Jones, Karim Khader, Westyn Branch-Elliman
JAMA network open  ·  01 Jul 2022  ·  doi:10.1001/jamanetworkopen.2022.20391
MPC-Based Decentralized Voltage Control in Power Distribution Systems With EV and PV Coordination
Lusha Wang, Anamika Dubey, Assefaw H. Gebremedhin, Anurag K. Srivastava, Noel Schulz
IEEE Transactions on Smart Grid  ·  01 Jul 2022  ·  doi:10.1109/tsg.2022.3156115
Artificial intelligence in differentiating tropical infections: A step ahead.
Shenoy S, Rajan AK, Rashid M, Chandran VP, Poojari PG, Kunhikatta V, Acharya D, Nair S, Varma M, Thunga G
PLoS neglected tropical diseases  ·  30 Jun 2022  ·  doi:10.1371/journal.pntd.0010455
COVID-19 Vaccine Hesitancy: The Perils of Peddling Science by Social Media and the Lay Press.
Thorakkattil SA, Abdulsalim S, Karattuthodi MS, Unnikrishnan MK, Rashid M, Thunga G
Vaccines  ·  30 Jun 2022  ·  doi:10.3390/vaccines10071059
Associations between comorbidity-related functional limitations and pneumonia outcomes.
Chastity Greene, Hui Nian, Yuwei Zhu, James W Antoon, Katherine L Freundlich, …, Justine Stassun, Jeff Robison, Andrew T Pavia, Carlos G Grijalva, Derek J Williams
Journal of hospital medicine  ·  27 Jun 2022  ·  doi:10.1002/jhm.12904
Using real world evidence to generate cost-effectiveness analysis of fibrinolytic therapy in patients with ST-segment elevation myocardial infarction in Thailand.
Trerayapiwat K, Jinatongthai P, Vathesatogkit P, Sritara P, Paengsai N, Dilokthornsakul P, Nathisuwan S, Le LM, Chaiyakunapruk N
The Lancet regional health. Western Pacific  ·  24 Jun 2022  ·  doi:10.1016/j.lanwpc.2022.100503
Efficacy and safety of urate-lowering agents in asymptomatic hyperuricemia: systematic review and network meta-analysis of randomized controlled trials.
Sapankaew T, Thadanipon K, Ruenroengbun N, Chaiyakittisopon K, Ingsathit A, Numthavaj P, Chaiyakunapruk N, McKay G, Attia J, Thakkinstian A
BMC nephrology  ·  23 Jun 2022  ·  doi:10.1186/s12882-022-02850-3
Zaire ebolavirus surveillance near the Bikoro region of the Democratic Republic of the Congo during the 2018 outbreak reveals presence of seropositive bats.
Seifert SN, Fischer RJ, Kuisma E, Badzi Nkoua C, Bounga G, …, Mombouli JV, Olson SH, Walzer C, Niama FR, Munster VJ
PLoS neglected tropical diseases  ·  22 Jun 2022  ·  doi:10.1371/journal.pntd.0010504
Incremental net monetary benefit of direct oral anticoagulants for the prevention of venous thromboembolism after total knee or hip replacement: A systematic review and meta-analysis.
Veettil SK, Harris J, Syeed MS, Thakkinstian A, Chaikledkaew U, Witt DM, Chaiyakunapruk N
Thrombosis research  ·  21 Jun 2022  ·  doi:10.1016/j.thromres.2022.06.004
Officer Networks and Firearm Behaviors: Assessing the Social Transmission of Weapon-Use
Marie Ouellet, Sadaf Hashimi, George G. Vega Yon
Journal of Quantitative Criminology  ·  15 Jun 2022  ·  doi:10.1007/s10940-022-09546-9
Public Health Value of a Hypothetical Pneumococcal Conjugate Vaccine (PCV) Introduction: A Case Study.
Chaiyakunapruk N, Song D, Lynch J, Kim JH, Dilokthornsakul P, Chotpitayasunondh T, Mogasale V
Vaccines  ·  15 Jun 2022  ·  doi:10.3390/vaccines10060950
Methodological approaches for assessing certainty of the evidence in umbrella reviews: A scoping review
Saranrat Sadoyu, Kaniz Afroz Tanni, Nontaporn Punrum, Sobhon Paengtrai, Warittakorn Kategaew, …, Ammarin Thakkinstian, Surachat Ngorsuraches, Mukdarut Bangpan, Sajesh Veettil, Nathorn Chaiyakunapruk
PLoS ONE  ·  08 Jun 2022  ·  doi:10.1371/journal.pone.0269009
Pharmacist gender and physician acceptance of antibiotic stewardship recommendations: An analysis of the reducing overuse of antibiotics at discharge home intervention.
Valerie M Vaughn, Daniel L Giesler, Daraoun Mashrah, Adamo Brancaccio, Katie Sandison, …, Julia E Szymczak, Chaorong Wu, Jennifer K Horowitz, Linda Bashaw, Adam L Hersh
Infection control and hospital epidemiology  ·  07 Jun 2022  ·  doi:10.1017/ice.2022.136
Increased carbapenemase testing following implementation of national VA guidelines for carbapenem-resistant Enterobacterales (CRE).
Fitzpatrick MA, Suda KJ, Ramanathan S, Wilson G, Poggensee L, …, Klutts JS, Perencevich E, Rubin M, Evans CT, QUERI CARRIAGE Program
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  02 Jun 2022  ·  doi:10.1017/ash.2021.220
Reusing Interactive Analysis Workflows
Kiran Gadhave, Zach Cutler, Alexander Lex
Computer Graphics Forum  ·  01 Jun 2022  ·  doi:10.31219/osf.io/udqjr
Epidemiology and outcomes associated with carbapenem-resistant Acinetobacter baumannii and carbapenem-resistant Pseudomonas aeruginosa: a retrospective cohort study.
Vivo A, Fitzpatrick MA, Suda KJ, Jones MM, Perencevich EN, Rubin MA, Ramanathan S, Wilson GM, Evans ME, Evans CT
BMC infectious diseases  ·  24 May 2022  ·  doi:10.1186/s12879-022-07436-w
Effects of Synbiotics, Probiotics, and Prebiotics on Liver Enzymes of Patients With Non-alcoholic Fatty Liver Disease: A Systematic Review and Network Meta-Analysis.
Kanchanasurakit S, Kositamongkol C, Lanoi K, Nunta M, Saetuan T, Chaiyakunapruk N, Saokaew S, Phisalprapa P
Frontiers in nutrition  ·  20 May 2022  ·  doi:10.3389/fnut.2022.880014
Development and evaluation of an interoperable natural language processing system for identifying pneumonia across clinical settings of care
Chapman AB, Peterson KS, Rutter E, Nevers M, Zhang M, Ying J, Jones M, Classen D, Jones B
JAMIA open  ·  10 May 2022  ·  doi:10.1101/2022.05.10.22274910
Performance of infectious diseases specialists, hospitalists, and other internal medicine physicians in antimicrobial case-based scenarios: Potential impact of antimicrobial stewardship programs at 16 Veterans' Affairs medical centers.
Graber CJ, Simon AR, Zhang Y, Goetz MB, Jones MM, Butler JM, Chou AF, Glassman PA
Infection control and hospital epidemiology  ·  04 May 2022  ·  doi:10.1017/ice.2022.100
Imported SARS-CoV-2 Variants of Concern Drove Spread of Infections across Kenya during the Second Year of the Pandemic
Carolyne Nasimiyu, Damaris Matoke-Muhia, Gilbert K. Rono, Eric Osoro, Daniel O. Ouso, …, Vishvanath Nene, Edward O. Abworo, M. Kariuki Njenga, Stephanie N. Seifert, Samuel O. Oyola
COVID  ·  01 May 2022  ·  doi:10.3390/covid2050044
Using artificial intelligence methods for systematic review in health sciences: A systematic review
Aymeric Blaizot, Sajesh K Veettil, Pantakarn Saidoung, Carlos Francisco Moreno-Garcia, Nirmalie Wiratunga, Magaly Aceves-Martins, Nai Ming Lai, Nathorn Chaiyakunapruk
Research Synthesis Methods  ·  01 May 2022  ·  doi:10.1002/jrsm.1553
Genetic biomarkers in multiple sclerosis: An umbrella review of meta-analyses of observational studies.
Tempest A, Veettil SK, Maharajan MK, Earl JC, Ngorsuraches S, Chaiyakunapruk N
Multiple sclerosis and related disorders  ·  30 Apr 2022  ·  doi:10.1016/j.msard.2022.103834
Pre-endoscopy coronavirus disease 2019 screening and severe acute respiratory syndrome coronavirus-2 nucleic acid amplification testing in the Veterans Affairs healthcare system: clinical practice patterns, outcomes, and relationship to procedure volume.
Gawron AJ, Sultan S, Glorioso TJ, Califano S, Kralovic SM, Jones M, Kirsh S, Dominitz JA
Gastrointestinal endoscopy  ·  22 Apr 2022  ·  doi:10.1016/j.gie.2022.04.018
Economic evaluation of seasonal influenza vaccination in elderly and health workers: A systematic review and meta-analysis.
Dilokthornsakul P, Lan LM, Thakkinstian A, Hutubessy R, Lambach P, Chaiyakunapruk N
EClinicalMedicine  ·  21 Apr 2022  ·  doi:10.1016/j.eclinm.2022.101410
Use of histamine-2 receptor antagonists and risk of inflammatory bowel diseases: A systematic review and meta-analysis of observational studies.
D’sa FF, Fernandes EZ, Kesarkar SV, Swaminathan L, Kunhikatta V, Rashid M, Thunga G, Chandran VP, Nair S
Journal of clinical pharmacy and therapeutics  ·  10 Apr 2022  ·  doi:10.1111/jcpt.13662
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States.
Cramer EY, Ray EL, Lopez VK, Bracher J, Brennen A, …, Gardner L, Nixon K, Burant JC, Wang L, Gao L
Proceedings of the National Academy of Sciences of the United States of America  ·  08 Apr 2022  ·  doi:10.1073/pnas.2113561119
Online Searching as a Practice for Evidence-Based Medicine in the Neonatal Intensive Care Unit, University of Malaya Medical Center, Malaysia: Cross-sectional Study
Nor Asiah Muhamad, Vinesha Selvarajah, Anuja Dharmaratne, Anushia Inthiran, Nor Soleha Mohd Dali, Nathorn Chaiyakunapruk, Nai Ming Lai
JMIR Formative Research  ·  06 Apr 2022  ·  doi:10.2196/30687
Healthcare-associated infections in Veterans Affairs acute-care and long-term healthcare facilities during the coronavirus disease 2019 (COVID-19) pandemic.
Evans ME, Simbartl LA, Kralovic SM, Clifton M, DeRoos K, …, Gauldin N, Flarida LK, Gamage SD, Jones MM, Roselle GA
Infection control and hospital epidemiology  ·  05 Apr 2022  ·  doi:10.1017/ice.2022.93
Association Between Procalcitonin and Antibiotics in Children With Community-Acquired Pneumonia.
Mert Sekmen, Jakobi Johnson, Yuwei Zhu, Laura F Sartori, Carlos G Grijalva, …, Krow Ampofo, Jeff Robison, Per H Gesteland, Andrew T Pavia, Derek J Williams
Hospital pediatrics  ·  01 Apr 2022  ·  doi:10.1542/hpeds.2021-006510
The economic burden of dementia in low- and middle-income countries (LMICs): a systematic review
Mattap SM, Mohan D, McGrattan AM, Allotey P, Stephan BC, Reidpath DD, Siervo M, Robinson L, Chaiyakunapruk N
BMJ Global Health  ·  01 Apr 2022  ·  doi:10.1136/bmjgh-2021-007409
Hospital coronavirus disease 2019 (COVID-19) public health reporting: Lessons from validation of an automated surveillance tool to facilitate data collection.
Gamage SD, Evans ME, McCauley BP, Lipscomb KR, Flarida L, Jones MM, Baza M, Barraza J, Simbartl LA, Roselle GA
Infection control and hospital epidemiology  ·  30 Mar 2022  ·  doi:10.1017/ice.2022.55
One-Year Costs Associated With the Veterans Affairs National TeleStroke Program.
Todd H Wagner, Lena Schoemaker, Elizabeth Gehlert, Richard E Nelson, Katherine Murphy, Sharyl Martini, Glenn D Graham, Prasanthi Govindarajan, Linda S Williams
Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research  ·  26 Mar 2022  ·  doi:10.1016/j.jval.2022.02.010
Mobile applications in medical education: A systematic review and meta-analysis.
Chandran VP, Balakrishnan A, Rashid M, Pai Kulyadi G, Khan S, Devi ES, Nair S, Thunga G
PloS one  ·  24 Mar 2022  ·  doi:10.1371/journal.pone.0265927
Mortality, Length of Stay, and Healthcare Costs Associated With Multidrug-Resistant Bacterial Infections Among Elderly Hospitalized Patients in the United States.
Richard E Nelson, David Hyun, Amanda Jezek, Matthew H Samore
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  23 Mar 2022  ·  doi:10.1093/cid/ciab696
Clinician documentation of patient centered care in the electronic health record.
Jorie M Butler, Bryan Gibson, Olga V Patterson, Laura J Damschroder, Corrinne H Halls, Daniel W Denhalter, Matthew H Samore, Haojia Li, Yue Zhang, Scott L DuVall
BMC medical informatics and decision making  ·  12 Mar 2022  ·  doi:10.1186/s12911-022-01794-w
Trends in Illness Severity, Hospitalization, and Mortality for Community-Onset Pneumonia at 118 US Veterans Affairs Medical Centers.
Jones BE, Ying J, Nevers MR, Alba PR, Patterson OV, …, Jones MM, Gundlapalli A, Dean NC, Samore MC, Greene T
Journal of general internal medicine  ·  09 Mar 2022  ·  doi:10.1007/s11606-022-07413-8
Comparative efficacy and safety of pharmacologic interventions to prevent mother-to-child transmission of hepatitis B virus: a systematic review and network meta-analysis
Nguyen HT, Thavorncharoensap M, Phung TL, Anothaisintawee T, Chaikledkaew U, …, Talungchit P, Chaiyakunapruk N, Attia J, McKay GJ, Thakkinstian A
American Journal of Obstetrics and Gynecology  ·  06 Mar 2022  ·  doi:10.1016/j.ajog.2022.02.042
Analysis of a national response to a White House directive for ending veteran suicide.
Kalvesmaki AF, Chapman AB, Peterson KS, Pugh MJ, Jones M, Gleason TC
Health services research  ·  03 Mar 2022  ·  doi:10.1111/1475-6773.13931
Examining the Impact of ICU Population Interaction Structure on Modeled Colonization Dynamics of Staphylococcus aureus
Mietchen MS, Short CT, Samore M, Lofgren ET, the CDC Modeling Infectious Diseases in Healthcare Program (MInD-Healthcare)
PLoS computational biology  ·  03 Mar 2022  ·  doi:10.1101/2022.03.01.22271660
Sleep, Diet, Physical Activity, and Stress during the COVID-19 Pandemic: A Qualitative Analysis.
Kyanna Orr, Zachary Ta, Kimberley Shoaf, Tanya M Halliday, Selene Tobin, Kelly Glazer Baron
Behavioral sciences (Basel, Switzerland)  ·  02 Mar 2022  ·  doi:10.3390/bs12030066
Situation of snakebite, antivenom market and access to antivenoms in ASEAN countries
Patikorn C, Ismail AK, Abidin SAZ, Blanco FB, Blessmann J, …, Trakulsrichai S, Vasaruchapong T, Chaiyakunapruk N, Taychakhoonavudh S, Othman I
BMJ Global Health  ·  01 Mar 2022  ·  doi:10.1136/bmjgh-2021-007639
Effects of pharmacist interventions on pain intensity: Systematic review and meta-analysis of randomized controlled trials.
Veettil SK, Darouiche G, Sawangjit R, Cox N, Lai NM, Chaiyakunapruk N
Journal of the American Pharmacists Association : JAPhA  ·  25 Feb 2022  ·  doi:10.1016/j.japh.2022.02.015
Who Is Hospitalized With Whom? Inpatient Contact Networks and Mixing Patterns
Madhobi KF, Kalyanaraman A, Anderson DJ, Dodds-Ashley E, Moehring RW, Lofgren ET
medRxiv  ·  24 Feb 2022  ·  doi:10.1101/2022.02.22.22271374
Meta-analysis of economic evaluation studies: data harmonisation and methodological issues.
Bagepally BS, Chaikledkaew U, Chaiyakunapruk N, Attia J, Thakkinstian A
BMC health services research  ·  15 Feb 2022  ·  doi:10.1186/s12913-022-07595-1
Three-Week Old Pigs Are Not Susceptible to Productive Infection with SARS-COV-2.
Haddock E, Callison J, Seifert SN, Okumura A, Tang-Huau TL, …, Hawman DW, Munster VJ, Jarvis MA, Richt JA, Feldmann H
Microorganisms  ·  10 Feb 2022  ·  doi:10.3390/microorganisms10020407
Population genomics and geographic dispersal in Chagas disease vectors: Landscape drivers and evidence of possible adaptation to the domestic setting.
Hernandez-Castro LE, Villacís AG, Jacobs A, Cheaib B, Day CC, …, Matthews L, Landguth EL, Costales JA, Llewellyn MS, Grijalva MJ
PLoS genetics  ·  04 Feb 2022  ·  doi:10.1371/journal.pgen.1010019
Transient dynamics of infection transmission in a simulated intensive care unit.
Jackson KC, Short CT, Toman KR, Mietchen MS, Lofgren E, CDC MInD-Healthcare Program
PloS one  ·  03 Feb 2022  ·  doi:10.1371/journal.pone.0260580
Consolidated Health Economic Evaluation Reporting Standards 2022 (CHEERS 2022) statement: updated reporting guidance for health economic evaluations.
Husereau D, Drummond M, Augustovski F, de Bekker-Grob E, Briggs AH, …, Daniel Mullins C, Petrou S, Pwu RF, Staniszewska S, CHEERS 2022 ISPOR Good Research Practices Task Force
Journal of managed care & specialty pharmacy  ·  01 Feb 2022  ·  doi:10.18553/jmcp.2022.28.2.146
Genomic Diversity of Haemophilus influenzae Serotype a in an Outbreak Community-Alaska, 2018.
Nolen LD, DeByle C, Topaz N, Simons BC, Tiffany A, …, Castrodale L, McLaughlin J, Klejka J, Wang X, Bruce M
The Journal of infectious diseases  ·  01 Feb 2022  ·  doi:10.1093/infdis/jiab376
Prevalence, Characteristics, and Outcomes of Emergency Department Discharge Among Patients With Sepsis.
Ithan D Peltan, Sierra R McLean, Emily Murnin, Allison M Butler, Emily L Wilson, Matthew H Samore, Catherine L Hough, Nathan C Dean, Joseph R Bledsoe, Samuel M Brown
JAMA network open  ·  01 Feb 2022  ·  doi:10.1001/jamanetworkopen.2021.47882
Treatment of extensively-drug resistant (XDR) Acinetobacter and impact on clinical outcomes in U.S. veterans affairs (VA) medical centers.
Fitzpatrick MA, Suda KJ, Poggensee L, Vivo A, Wilson G, Jones MM, Evans M, Safdar N, Evans CT
American journal of infection control  ·  30 Jan 2022  ·  doi:10.1016/j.ajic.2022.01.011
Barriers and Enablers for Adherence to Antiretroviral Therapy Among People Living With HIV/AIDS in the Era of COVID-19: A Qualitative Study From Pakistan.
Ahmed A, Dujaili JA, Jabeen M, Umair MM, Chuah LH, Hashmi FK, Awaisu A, Chaiyakunapruk N
Frontiers in pharmacology  ·  28 Jan 2022  ·  doi:10.3389/fphar.2021.807446
Development and evaluation of a structured guide to assess the preventability of hospital-onset bacteremia and fungemia.
Gregory M Schrank, Anna Sick-Samuels, Susan C Bleasdale, Jesse T Jacob, Raymund Dantes, …, Gwen Robinson, Clayton H Brown, Anthony D Harris, Surbhi Leekha, CDC Prevention Epicenters Program
Infection control and hospital epidemiology  ·  28 Jan 2022  ·  doi:10.1017/ice.2021.528
The formation of political discussion networks.
Hâncean MG, Perc M, Gheorghiță A, Vega Yon GG, Mihăilă BE
Royal Society open science  ·  26 Jan 2022  ·  doi:10.1098/rsos.211609
aphylo: Statistical Inference and Prediction of Annotations in Phylogenetic Trees
George Vega Yon
CRAN: Contributed Packages  ·  21 Jan 2022  ·  doi:10.32614/cran.package.aphylo
Factors affecting the outcomes in patients with acute respiratory distress syndrome in a tertiary care setting.
Rashid M, Ramakrishnan M, Muthu DS, Chandran VP, Thunga G, Kunhikatta V, Shanbhag V, Acharya RV, Nair S
Clinical epidemiology and global health  ·  18 Jan 2022  ·  doi:10.1016/j.cegh.2022.100972
Expanding the Global Outreach of Consolidated Health Economic Evaluation Reporting Standards 2022.
Chaiyakunapruk N, Tan CJ
Value in health regional issues  ·  11 Jan 2022  ·  doi:10.1016/j.vhri.2021.11.002
Antibiotic Use and Presumptive Pathogens in the Veterans Affairs Healthcare System.
Christine Tedijanto, McKenna Nevers, Matthew H Samore, Marc Lipsitch
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  07 Jan 2022  ·  doi:10.1093/cid/ciab170
Association of Hormonal Contraceptive Use With Adverse Health Outcomes: An Umbrella Review of Meta-analyses of Randomized Clinical Trials and Cohort Studies.
Brabaharan S, Veettil SK, Kaiser JE, Raja Rao VR, Wattanayingcharoenchai R, …, Insin P, Talungchit P, Anothaisintawee T, Thakkinstian A, Chaiyakunapruk N
JAMA network open  ·  04 Jan 2022  ·  doi:10.1001/jamanetworkopen.2021.43730
Healthcare resource utilisation pattern and costs associated with herpes simplex virus diagnosis and management: a systematic review.
Lee SWH, Gottlieb SL, Chaiyakunapruk N
BMJ open  ·  04 Jan 2022  ·  doi:10.1136/bmjopen-2021-049618
Author Correction: The impact of school opening model on SARS-CoV-2 community incidence and mortality.
Ertem Z, Schechter-Perkins EM, Oster E, van den Berg P, Epshtein I, …, Wilson FA, Perencevich E, Pettey WBP, Branch-Elliman W, Nelson RE
Nature medicine  ·  01 Jan 2022  ·  doi:10.1038/s41591-021-01669-z
Consolidated Health Economic Evaluation Reporting Standards (CHEERS) 2022 Explanation and Elaboration: A Report of the ISPOR CHEERS II Good Practices Task Force
Husereau D, Drummond M, Augustovski F, de Bekker-Grob E, Briggs AH, …, Mauskopf J, Mullins CD, Petrou S, Pwu RF, Staniszewska S
Value in Health  ·  01 Jan 2022  ·  doi:10.1016/j.jval.2021.10.008
Does meta-analysis of economic evaluations have the potential to play a role in healthcare decision-making in the United States?
Veettil SK, Syeed MS, Noviyan R, Thakkinstian A, Chaiyakunapruk N
Journal of medical economics  ·  01 Jan 2022  ·  doi:10.1080/13696998.2022.2083347
Effect of Vitamin D Supplementation in Type 2 Diabetes Patients with Tuberculosis: A Systematic Review.
Patel DG, Kurian SJ, Miraj SS, Rashid M, Thomas L, Rodrigues GS, Banerjee M, Khandelwal B, Saravu K, Rao M
Current diabetes reviews  ·  01 Jan 2022  ·  doi:10.2174/1573399817666210902144539
N-Acetyl Cysteine in Rodenticide Poisoning: A Systematic Review and Meta-Analysis.
Rashid M, Chandran VP, Nair S, Muthu DS, Pappuraj J, …, Sridhar B, Mark K, Hyder S, Khan S, Thunga G
Current reviews in clinical and experimental pharmacology  ·  01 Jan 2022  ·  doi:10.2174/2772432816666210825102726
Prevalence and Predictors of Potentially Inappropriate Medication Use Among Elderly Patients Using Updated Beers Criteria 2019: A Single Centered Retrospective Analysis.
Chinthalapudi SS, Cheeti S, Bajpai A, Deepika S, Thunga G, Rashid M, Acharya RV, Nair S
Current drug safety  ·  01 Jan 2022  ·  doi:10.2174/1574886316666210423113916

2021

Loon: Using Exemplars to Visualize Large-Scale Microscopy Data.
Lange D, Polanco E, Judson-Torres R, Zangle T, Lex A
IEEE transactions on visualization and computer graphics  ·  24 Dec 2021  ·  doi:10.1109/tvcg.2021.3114766
From the Cochrane Library: Systemic treatments for eczema, a network meta-analysis.
Guo S, Donaldson M, Ortega-Loayza AG, Sawangjit R, Chaiyakunapruk N, Adler BL
Journal of the American Academy of Dermatology  ·  14 Dec 2021  ·  doi:10.1016/j.jaad.2021.12.012
Coffee Consumption and Non-alcoholic Fatty Liver Disease: An Umbrella Review and a Systematic Review and Meta-analysis.
Kositamongkol C, Kanchanasurakit S, Auttamalang C, Inchai N, Kabkaew T, Kitpark S, Chaiyakunapruk N, Duangjai A, Saokaew S, Phisalprapa P
Frontiers in pharmacology  ·  13 Dec 2021  ·  doi:10.3389/fphar.2021.786596
Strategies to minimize inequity in COVID-19 vaccine access in the US: Implications for future vaccine rollouts.
Anindit Chhibber, Aditi Kharat, Khanh Duong, Richard E Nelson, Matthew H Samore, Fernando A Wilson, Nathorn Chaiyakunapruk
Lancet regional health. Americas  ·  08 Dec 2021  ·  doi:10.1016/j.lana.2021.100138
An ACE2-dependent Sarbecovirus in Russian bats is resistant to SARS-CoV-2 vaccines
Seifert SN, Bai S, Fawcett S, Norton EB, Zwezdaryk KJ, Robinson J, Gunn B, Letko MC
bioRxiv  ·  07 Dec 2021  ·  doi:10.1101/2021.12.05.471310
Modelling Mutation in Equine Infectious Anemia Virus Infection Suggests a Path to Viral Clearance with Repeated Vaccination.
Schwartz EJ, Costris-Vas C, Smith SR
Viruses  ·  06 Dec 2021  ·  doi:10.3390/v13122450
Parainfluenza Virus Types 1-3 Infections Among Children and Adults Hospitalized With Community-acquired Pneumonia.
Leigh M Howard, Kathryn M Edwards, Yuwei Zhu, Derek J Williams, Wesley H Self, …, Sandra R Arnold, Jonathan A McCullers, Evan J Anderson, Richard G Wunderink, Carlos G Grijalva
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  06 Dec 2021  ·  doi:10.1093/cid/ciaa973
Directly Measured Costs of Severe Maternal Morbidity Events during Delivery Admission Compared with Uncomplicated Deliveries.
Michelle P Debbink, Torri D Metz, Richard E Nelson, Sophie E Janes, Alexandra Kroes, …, Cara C Heuser, Marcela C Smid, Robert M Silver, Michael W Varner, Brett D Einerson
American journal of perinatology  ·  02 Dec 2021  ·  doi:10.1055/s-0041-1740237
Estimation of the strength of mate preference from mated pairs observed in the wild.
Clancey E, Johnson TR, Harmon LJ, Hohenlohe PA
Evolution; international journal of organic evolution  ·  02 Dec 2021  ·  doi:10.1111/evo.14397
Meta-Analysis of NUDT15 Genetic Polymorphism on Thiopurine-Induced Myelosuppression in Asian Populations.
Khaeso K, Udayachalerm S, Komvilaisak P, Chainansamit SO, Suwannaying K, …, Nakkam N, Sukasem C, Puangpetch A, Tassaneeyakul W, Chaiyakunapruk N
Frontiers in pharmacology  ·  02 Dec 2021  ·  doi:10.3389/fphar.2021.784712
Analysis of Vaccine Effectiveness Against COVID-19 and the Emergence of Delta and Other Variants of Concern in Utah.
Keegan LT, Truelove S, Lessler J
JAMA network open  ·  01 Dec 2021  ·  doi:10.1001/jamanetworkopen.2021.40906
Employee Responses to Compensation Changes: Evidence from a Sales Firm
Jason Sandvik, Richard Saouma, Nathan Seegert, Christopher Stanton
Management Science  ·  01 Dec 2021  ·  doi:10.1287/mnsc.2020.3895
Persistent Opioid Use After Combat Injury and Subsequent Long-term Risk of Abuse: A Retrospective Cohort Study.
Beyer CA, Poltavskiy E, Walker LE, Pettey W, Suo Y, …, Watrous JR, Howard JT, Janak JC, Stewart IJ, Gundlapalli A
Annals of surgery  ·  01 Dec 2021  ·  doi:10.1097/sla.0000000000003658
Protocol for the models of primary osteoporosis screening in men (MOPS) cluster randomized trial.
Cathleen S Colón-Emeric, Richard Lee, Carl F Pieper, Kenneth W Lyles, Leah L Zullig, Richard E Nelson, Katina Robinson, Ivuoma Igwe, Jyotsna Jadhav, Robert A Adler
Contemporary clinical trials  ·  27 Nov 2021  ·  doi:10.1016/j.cct.2021.106634
The association between HLA-B*15:02 and phenytoin-induced severe cutaneous adverse reactions: a meta-analysis.
Phung TH, Cong Duong KN, Junio Gloria MA, Nguyen TK
Pharmacogenomics  ·  24 Nov 2021  ·  doi:10.2217/pgs-2021-0126
The science of the host-virus network.
Albery GF, Becker DJ, Brierley L, Brook CE, Christofferson RC, …, Ryan SJ, Seifert S, Sjodin AR, Sorrell EM, Carlson CJ
Nature microbiology  ·  24 Nov 2021  ·  doi:10.1038/s41564-021-00999-5
Budget Impact of Emicizumab for Routine Prophylaxis of Bleeding Episodes in Patients With Hemophilia A With Inhibitors.
Watanabe AH, Lee SWH, Chai-Adisaksopha C, Lim MY, Chaiyakunapruk N
Value in health regional issues  ·  17 Nov 2021  ·  doi:10.1016/j.vhri.2021.07.003
Survey of physician and pharmacist steward perceptions of their antibiotic stewardship programs.
Shana A B Burrowes, Mari-Lynn Drainoni, Maria Tjilos, Jorie M Butler, Laura J Damschroder, …, Matthew H Samore, Jincheng Shen, Edward Stenehjem, Yue Zhang, Tamar F Barlam
Antimicrobial stewardship & healthcare epidemiology : ASHE  ·  12 Nov 2021  ·  doi:10.1017/ash.2021.219
High variability in transmission of SARS-CoV-2 within households and implications for control.
Toth DJA, Beams AB, Keegan LT, Zhang Y, Greene T, Orleans B, Seegert N, Looney A, Alder SC, Samore MH
PloS one  ·  10 Nov 2021  ·  doi:10.1371/journal.pone.0259097
The United States COVID-19 Forecast Hub dataset
Cramer EY, Huang Y, Wang Y, Ray EL, Cornell M, …, Shah A, Wattanchit N, Zorn MW, Reich NG, US COVID-19 Forecast Hub Consortium
Scientific Data  ·  04 Nov 2021  ·  doi:10.1101/2021.11.04.21265886
Age-Related Disease Risks in Younger versus Older B-Cell Non-Hodgkin's Lymphoma Survivors.
Ocier K, Abdelaziz S, Kim S, Kim S, Rowe K, …, Porucznik CA, Shoaf K, Stanford JB, Lee CJ, Hashibe M
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology  ·  03 Nov 2021  ·  doi:10.1158/1055-9965.epi-21-0190
The Effects of Using a Clinical Prediction Rule to Prioritize Diagnostic Testing on Transmission and Hospital Burden: A Modeling Example of Early Severe Acute Respiratory Syndrome Coronavirus 2.
Reimer JR, Ahmed SM, Brintz BJ, Shah RU, Keegan LT, Ferrari MJ, Leung DT
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Nov 2021  ·  doi:10.1093/cid/ciab177
Through the Looking Glass: Insights Into Visualization Pedagogy Through Sentiment Analysis of Peer Review Text.
Beasley ZJ, Friedman A, Rosen P
IEEE computer graphics and applications  ·  01 Nov 2021  ·  doi:10.1109/mcg.2021.3115387
Transfusion Preparedness in the Labor and Delivery Unit: An Initiative to Improve Safety and Cost.
Ashley E Benson, Ryan A Metcalf, Kelly Cail, Mark D Rollins, Christine M Warrick, Dane Falkner, Erin A S Clark, Richard E Nelson, Brett D Einerson
Obstetrics and gynecology  ·  01 Nov 2021  ·  doi:10.1097/aog.0000000000004571
Association of proton-pump inhibitor use with adverse health outcomes: A systematic umbrella review of meta-analyses of cohort studies and randomised controlled trials
Veettil SK, Sadoyu S, Bald EM, Chandran VP, Khuu SAT, …, Lee YY, Nair AB, Antony PT, Ford AC, Chaiyakunapruk N
British Journal of Clinical Pharmacology  ·  30 Oct 2021  ·  doi:10.1111/bcp.15103
Methotrexate related cutaneous adverse drug reactions: a systematic literature review.
Zuber M, Harikrishna, Vidhyashree, Chhabra M, Venkataraman R, Kumar S, Rashid M
Journal of basic and clinical physiology and pharmacology  ·  27 Oct 2021  ·  doi:10.1515/jbcpp-2021-0165
Positive Predictive Value of COVID-19 ICD-10 Diagnosis Codes Across Calendar Time and Clinical Setting.
Lynch KE, Viernes B, Gatsby E, DuVall SL, Jones BE, Box TL, Kreisler C, Jones M
Clinical epidemiology  ·  27 Oct 2021  ·  doi:10.2147/clep.s335621
The impact of school opening model on SARS-CoV-2 community incidence and mortality.
Ertem Z, Schechter-Perkins EM, Oster E, van den Berg P, Epshtein I, …, Wilson FA, Perencevich E, Pettey WBP, Branch-Elliman W, Nelson RE
Nature medicine  ·  27 Oct 2021  ·  doi:10.1038/s41591-021-01563-8
Cost-effectiveness analysis of pharmacist interventions in patients with heart failure in Thailand.
Arunmanakul P, Chaiyakunapruk N, Phrommintikul A, Ruengorn C, Permsuwan U
Journal of the American Pharmacists Association : JAPhA  ·  11 Oct 2021  ·  doi:10.1016/j.japh.2021.10.005
Patient selection in the Comprehensive Care for Joint Replacement model.
Hyunkyu Ko, Brook I Martin, Richard E Nelson, Christopher E Pelt
Health services research  ·  06 Oct 2021  ·  doi:10.1111/1475-6773.13880
An Adaptive Machine Learning Framework for Behind-the-Meter Load/PV Disaggregation
Ramyar Saeedi, Sajan K. Sadanandan, Anurag K. Srivastava, Kevin L. Davies, Assefaw H. Gebremedhin
IEEE Transactions on Industrial Informatics  ·  01 Oct 2021  ·  doi:10.1109/tii.2021.3060898
Medical Outcomes, Quality of Life, and Family Perceptions for Outpatient vs Inpatient Neutropenia Management After Chemotherapy for Pediatric Acute Myeloid Leukemia.
Kelly D Getz, Julia E Szymczak, Yimei Li, Rachel Madding, Yuan-Shung V Huang, …, Naomi Winick, Jennifer J Wilkes, Jennifer C Yu, Brian T Fisher, Richard Aplenc
JAMA network open  ·  01 Oct 2021  ·  doi:10.1001/jamanetworkopen.2021.28385
Predicting intent behind selections in scatterplot visualizations
Kiran Gadhave, Jochen Görtler, Zach Cutler, Carolina Nobre, Oliver Deussen, Miriah Meyer, Jeff M. Phillips, Alexander Lex
Information Visualization  ·  01 Oct 2021  ·  doi:10.1177/14738716211038604
Risk Factors Associated With Carbapenemase-Producing Carbapenem-Resistant Enterobacteriaceae Positive Cultures in a Cohort of US Veterans.
Wilson GM, Suda KJ, Fitzpatrick MA, Bartle B, Pfeiffer CD, …, Rubin MA, Perencevich E, Evans M, Evans CT, QUERI CARRIAGE Program
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Oct 2021  ·  doi:10.1093/cid/ciab415
A Veterans' Healthcare Administration (VHA) antibiotic stewardship intervention to improve outpatient antibiotic use for acute respiratory infections: A cost-effectiveness analysis.
Minkyoung Yoo, Karl Madaras-Kelly, McKenna Nevers, Katherine E Fleming-Dutra, Adam L Hersh, Jian Ying, Ben Haaland, Matthew Samore, Richard E Nelson
Infection control and hospital epidemiology  ·  29 Sep 2021  ·  doi:10.1017/ice.2021.393
Effectiveness of mRNA Covid-19 Vaccine among U.S. Health Care Personnel.
Tamara Pilishvili, Ryan Gierke, Katherine E Fleming-Dutra, Jennifer L Farrar, Nicholas M Mohr, …, Nora Chea, Shelley S Magill, Jennifer R Verani, Stephanie J Schrag, Vaccine Effectiveness among Healthcare Personnel Study Team
The New England journal of medicine  ·  22 Sep 2021  ·  doi:10.1056/nejmoa2106599
Assessment of health equity consideration in masking/PPE policies to contain COVID-19 using PROGRESS-plus framework: a systematic review.
Chhibber A, Kharat A, Kneale D, Welch V, Bangpan M, Chaiyakunapruk N
BMC public health  ·  16 Sep 2021  ·  doi:10.1186/s12889-021-11688-7
Methodological Approaches for Assessing Certainty of the Evidence in Umbrella Reviews: a Systematic Review
Sadoyu S, Tanni KA, Punrum N, Paengtrai S, Lai NM, Thakkinstian A, Ngorsuraches S, Bangpan M, Chaiyakunapruk N
Research Square  ·  14 Sep 2021  ·  doi:10.21203/rs.3.rs-543971/v1
The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout.
Nicolò Gozzi, Paolo Bajardi, Nicola Perra
PLoS computational biology  ·  10 Sep 2021  ·  pmid:34506478
Continued need for non-pharmaceutical interventions after COVID-19 vaccination in long-term-care facilities.
Love J, Keegan LT, Angulo FJ, McLaughlin JM, Shea KM, Swerdlow DL, Samore MH, Toth DJA
Scientific reports  ·  10 Sep 2021  ·  doi:10.1038/s41598-021-97612-w
Comparison of antigen- and RT-PCR-based testing strategies for detection of SARS-CoV-2 in two high-exposure settings.
Jay Love, Megan T Wimmer, Damon J A Toth, Arthi Chandran, Dilip Makhija, Charles K Cooper, Matthew H Samore, Lindsay T Keegan
PloS one  ·  07 Sep 2021  ·  pmid:34492025
Comparison of antigen- and RT-PCR-based testing strategies for detection of SARS-CoV-2 in two high-exposure settings.
Love J, Wimmer MT, Toth DJA, Chandran A, Makhija D, Cooper CK, Samore MH, Keegan LT
PloS one  ·  07 Sep 2021  ·  doi:10.1371/journal.pone.0253407
Impact of Implementation of the Core Elements of Outpatient Antibiotic Stewardship Within Veterans Health Administration Emergency Departments and Primary Care Clinics on Antibiotic Prescribing and Patient Outcomes.
Karl Madaras-Kelly, Christopher Hostler, Mary Townsend, Emily M Potter, Emily S Spivak, …, Suzette A Rovelsky, Benjamin Pontefract, Katherine Fleming-Dutra, Lauri A Hicks, Matthew H Samore
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  07 Sep 2021  ·  doi:10.1093/cid/ciaa1831
MrIML: Multi-response interpretable machine learning to model genomic landscapes.
Fountain-Jones NM, Kozakiewicz CP, Forester BR, Landguth EL, Carver S, …, Kraberger S, Trumbo DR, Mayer M, Clark NJ, Machado G
Molecular ecology resources  ·  06 Sep 2021  ·  doi:10.1111/1755-0998.13495
Effectiveness of blended learning in pharmacy education: An experimental study using clinical research modules.
Balakrishnan A, Nair S, Kunhikatta V, Rashid M, Unnikrishnan MK, Jagannatha PS, Chandran VP, Khera K, Thunga G
PloS one  ·  01 Sep 2021  ·  doi:10.1371/journal.pone.0256814
Temporal Trends and Hospital Variation in Time-to-Antibiotics Among Veterans Hospitalized With Sepsis.
Wayne MT, Seelye S, Molling D, Wang XQ, Donnelly JP, Hogan CK, Jones MM, Iwashyna TJ, Liu VX, Prescott HC
JAMA network open  ·  01 Sep 2021  ·  doi:10.1001/jamanetworkopen.2021.23950
ReHouSED: A novel measurement of Veteran housing stability using natural language processing.
Chapman AB, Jones A, Kelley AT, Jones B, Gawron L, …, Cook J, Pettey W, Peterson K, Jones M, Nelson R
Journal of biomedical informatics  ·  30 Aug 2021  ·  doi:10.1016/j.jbi.2021.103903
Optimizing Costs and Outcomes for Carpal Tunnel Release Surgery: A Cost-Effectiveness Analysis from Societal and Health-Care System Perspectives.
Rogers MJ, Stephens AR, Yoo M, Nelson RE, Kazmers NH
The Journal of bone and joint surgery. American volume  ·  24 Aug 2021  ·  doi:10.2106/jbjs.20.02126
Effects of Telemedicine on Obese Patients With Non-alcoholic Fatty Liver Disease: A Systematic Review and Meta-Analysis.
Saokaew S, Kanchanasurakit S, Kositamongkol C, Chaiyo K, Jirapisut T, Aomsin N, Leewongsakorn P, Chaiyakunapruk N, Phisalprapa P
Frontiers in medicine  ·  19 Aug 2021  ·  doi:10.3389/fmed.2021.723790
Building, Importing, and Exporting GEXF Graph Files with rgexf
George Yon
Journal of Open Source Software  ·  12 Aug 2021  ·  doi:10.21105/joss.03456
Efficacy and safety of corticosteroids in acute respiratory distress syndrome: An overview of meta-analyses.
Rashid M, Khan S, Datta D, Thunga G, Chandran VP, Balakrishnan A, Shanbhag V, Acharya RV, Nair S
International journal of clinical practice  ·  04 Aug 2021  ·  doi:10.1111/ijcp.14645
Excess Risk of COVID-19 to University Populations Resulting from In-Person Sporting Events.
Johnson SS, Jackson KC, Mietchen MS, Sbai S, Schwartz EJ, Lofgren ET
International journal of environmental research and public health  ·  04 Aug 2021  ·  doi:10.3390/ijerph18168260
Was In-Person Attendance at Major College and Professional Football Games in 2020 the Right Call?
Michael A Rubin
JAMA network open  ·  02 Aug 2021  ·  doi:10.1001/jamanetworkopen.2021.19580
Modeling transmission of pathogens in healthcare settings.
Stachel A, Keegan LT, Blumberg S, CDC MInD Healthcare Program
Current opinion in infectious diseases  ·  01 Aug 2021  ·  doi:10.1097/qco.0000000000000742
Polarity in the Classroom: A Case Study Leveraging Peer Sentiment Toward Scalable Assessment
Zachariah J. Beasley, Les A. Piegl, Paul Rosen
IEEE Transactions on Learning Technologies  ·  01 Aug 2021  ·  doi:10.1109/tlt.2021.3102184
Topic-to-Topic Modeling for COVID-19 Mortality
Jeffrey Humpherys, Ahmad Halwani, Barbara E Jones, Makoto M Jones, Matthew H Samore, Sadiqa Mahmood, Dale Sanders
2021 IEEE 9TH INTERNATIONAL CONFERENCE ON HEALTHCARE INFORMATICS (ICHI 2021)  ·  01 Aug 2021  ·  doi:10.1109/ichi52183.2021.00048
A Knowledge Network-Based Approach to Facilitate Annotation of Clinical Pathway Component Clusters
S.M. Shamimul Hasan, Minsu Kim, Byung H. Park, Makoto M. Jones, Merry Ward, Jonathan Nebeker
2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI)  ·  27 Jul 2021  ·  doi:10.1109/bhi50953.2021.9508508
Ecological Approach to Understanding Superinfection Inhibition in Bacteriophage.
Biggs KRH, Bailes CL, Scott L, Wichman HA, Schwartz EJ
Viruses  ·  17 Jul 2021  ·  doi:10.3390/v13071389
Computerized Mortality Prediction for Community-acquired Pneumonia at 117 Veterans Affairs Medical Centers.
Jones BE, Ying J, Nevers M, Alba PR, He T, …, Weir CR, Dean NC, Fine MJ, Samore MC, Greene TH
Annals of the American Thoracic Society  ·  01 Jul 2021  ·  doi:10.1513/annalsats.202011-1372oc
Haemophilus influenzae Serotype a (Hia) Carriage in a Small Alaska Community After a Cluster of Invasive Hia Disease, 2018.
Nolen LD, Tiffany A, DeByle C, Bruden D, Thompson G, …, Simons BC, Klejka J, Castrodale L, McLaughlin J, Bruce MG
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Jul 2021  ·  doi:10.1093/cid/ciaa750
Neurologic Manifestations of COVID-19 in Children: Emerging Pathophysiologic Insights.
Michelle E Schober, Andrew T Pavia, John F Bohnsack
Pediatric critical care medicine : a journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies  ·  01 Jul 2021  ·  doi:10.1097/pcc.0000000000002774
Sanguine: Visual analysis for patient blood management
Haihan Lin, Ryan A Metcalf, Jack Wilburn, Alexander Lex
Information Visualization  ·  01 Jul 2021  ·  doi:10.1177/14738716211028565
Gastric Cancer in Alaska Native and American Indian People Living in Alaska, 1990-2017.
Nolen LD, Bressler S, Vindigni SM, Miller K, Nash S
Clinical and translational gastroenterology  ·  23 Jun 2021  ·  doi:10.14309/ctg.0000000000000374
Pattern, severity, and outcome of adverse drug reactions in a tertiary care hospital: an evidence from a cross-sectional study.
Chhabra M, Jangra MS, Rashid M, Sharma P, Vidyasagar K
Journal of basic and clinical physiology and pharmacology  ·  21 Jun 2021  ·  doi:10.1515/jbcpp-2020-0218
Effectiveness of blended learning in pharmacy education: A systematic review and meta-analysis.
Balakrishnan A, Puthean S, Satheesh G, M K U, Rashid M, Nair S, Thunga G
PloS one  ·  17 Jun 2021  ·  doi:10.1371/journal.pone.0252461
Efficient and effective single-step screening of individual samples for SARS-CoV-2 RNA using multi-dimensional pooling and Bayesian inference.
Juliana Sobczyk, Michael T Pyne, Adam Barker, Jeanmarie Mayer, Kimberly E Hanson, Matthew H Samore, Rodrigo Noriega
Journal of the Royal Society, Interface  ·  16 Jun 2021  ·  doi:10.1098/rsif.2021.0155
netplot: Beautiful Graph Drawing
George Vega Yon, Porter Bischoff
CRAN: Contributed Packages  ·  16 Jun 2021  ·  doi:10.32614/cran.package.netplot
Increased Hemoglobin A1c Time in Range Reduces Adverse Health Outcomes in Older Adults With Diabetes.
Julia C Prentice, David C Mohr, Libin Zhang, Donglin Li, Aaron Legler, Richard E Nelson, Paul R Conlin
Diabetes care  ·  14 Jun 2021  ·  doi:10.2337/dc21-0292
Nonventilator hospital-acquired pneumonia: A call to action.
Shannon C Munro, Dian Baker, Karen K Giuliano, Sheila C Sullivan, Judith Haber, …, Olivia Lounsbury, Michelle Lucatorto, Ryan Miller, Brian Pauley, Michael Klompas
Infection control and hospital epidemiology  ·  09 Jun 2021  ·  doi:10.1017/ice.2021.239
Natural language processing for the surveillance of postoperative venous thromboembolism.
Jianlin Shi, John F Hurdle, Stacy A Johnson, Jeffrey P Ferraro, David E Skarda, Samuel R G Finlayson, Matthew H Samore, Brian T Bucher
Surgery  ·  03 Jun 2021  ·  doi:10.1016/j.surg.2021.04.027
Impact of Social Distancing and Travel Restrictions on Non-Coronavirus Disease 2019 (Non-COVID-19) Respiratory Hospital Admissions in Young Children in Rural Alaska.
Nolen LD, Seeman S, Bruden D, Klejka J, Desnoyers C, Tiesinga J, Singleton R
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Jun 2021  ·  doi:10.1093/cid/ciaa1328
Interim Estimates of Vaccine Effectiveness of Pfizer-BioNTech and Moderna COVID-19 Vaccines Among Health Care Personnel - 33 U.S. Sites, January-March 2021.
Tamara Pilishvili, Katherine E Fleming-Dutra, Jennifer L Farrar, Ryan Gierke, Nicholas M Mohr, …, Nora Chea, Shelley S Magill, Jennifer Verani, Stephanie Schrag, Vaccine Effectiveness Among Healthcare Personnel Study Team
MMWR. Morbidity and mortality weekly report  ·  21 May 2021  ·  doi:10.15585/mmwr.mm7020e2
Prevalence of Polypharmacy, Hyperpolypharmacy and Potentially Inappropriate Medication Use in Older Adults in India: A Systematic Review and Meta-Analysis.
Bhagavathula AS, Vidyasagar K, Chhabra M, Rashid M, Sharma R, Bandari DK, Fialova D
Frontiers in pharmacology  ·  19 May 2021  ·  doi:10.3389/fphar.2021.685518
Reporting uncertainty in results-Response to article on copper cold-spray technology.
Piyali Chatterjee, John D Coppin, Marjory D Williams, Hosoon Choi, John E Zeber, Richard E Nelson, Chetan Jinadatha
Infection control and hospital epidemiology  ·  18 May 2021  ·  doi:10.1017/ice.2021.32
Modeling of Future COVID-19 Cases, Hospitalizations, and Deaths, by Vaccination Rates and Nonpharmaceutical Intervention Scenarios - United States, April-September 2021.
Borchering RK, Viboud C, Howerton E, Smith CP, Truelove S, …, Slayton RB, Biggerstaff M, Johansson MA, Shea K, Lessler J
MMWR. Morbidity and mortality weekly report  ·  14 May 2021  ·  doi:10.15585/mmwr.mm7019e3
Cardiovascular disease risks in younger versus older adult B-cell non-Hodgkin's lymphoma survivors.
Krista Ocier, Sarah Abdelaziz, Seungmin Kim, Kerry Rowe, John Snyder, …, Christina A Porucznik, Kimberley Shoaf, Joseph B Stanford, Catherine J Lee, Mia Hashibe
Cancer medicine  ·  12 May 2021  ·  doi:10.1002/cam4.3934
reVISit: Looking Under the Hood of Interactive Visualization Studies
Carolina Nobre, Dylan Wootton, Zach Cutler, Lane Harrison, Hanspeter Pfister, Alexander Lex
Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems  ·  06 May 2021  ·  doi:10.31219/osf.io/cbw36
Coordinated Strategy for a Model-Based Decision Support Tool for Coronavirus Disease, Utah, USA.
Hannah R Meredith, Emerson Arehart, Kyra H Grantz, Alexander Beams, Theresa Sheets, …, Shannon Frattaroli, Matthew H Samore, Justin Lessler, Elizabeth C Lee, Lindsay T Keegan
Emerging infectious diseases  ·  01 May 2021  ·  pmid:33900179
Coordinated Strategy for a Model-Based Decision Support Tool for Coronavirus Disease, Utah, USA.
Meredith HR, Arehart E, Grantz KH, Beams A, Sheets T, …, Frattaroli S, Samore MH, Lessler J, Lee EC, Keegan LT
Emerging infectious diseases  ·  01 May 2021  ·  doi:10.3201/eid2705.203075
Temporary Financial Assistance Decreased Health Care Costs For Veterans Experiencing Housing Instability.
Richard E Nelson, Ann Elizabeth Montgomery, Ying Suo, James Cook, Warren Pettey, …, William Evans, Lillian Gelberg, Stefan G Kertesz, Jack Tsai, Thomas H Byrne
Health affairs (Project Hope)  ·  01 May 2021  ·  doi:10.1377/hlthaff.2020.01796
Angiotensin II receptor blocker or angiotensin-converting enzyme inhibitor use and COVID-19-related outcomes among US Veterans.
Catherine G Derington, Jordana B Cohen, April F Mohanty, Tom H Greene, James Cook, …, Srinivasan Beddhu, Alfred K Cheung, Weiming Xian, William S Weintraub, Adam P Bress
PloS one  ·  23 Apr 2021  ·  doi:10.1371/journal.pone.0248080
Zoonotic Risk Technology Enters the Viral Emergence Toolkit
Carlson C, Farrell M, Grange Z, Han B, Mollentze N, …, Sironen T, Standley C, Taylor K, Venter M, Webala P
[no publisher info]  ·  07 Apr 2021  ·  doi:10.20944/preprints202104.0200.v1
A scenario modeling pipeline for COVID-19 emergency planning.
Joseph C Lemaitre, Kyra H Grantz, Joshua Kaminsky, Hannah R Meredith, Shaun A Truelove, …, Josh Wills, Kathryn Kaminsky, Javier Perez-Saez, Justin Lessler, Elizabeth C Lee
Scientific reports  ·  06 Apr 2021  ·  pmid:33824358
A scenario modeling pipeline for COVID-19 emergency planning.
Lemaitre JC, Grantz KH, Kaminsky J, Meredith HR, Truelove SA, …, Wills J, Kaminsky K, Perez-Saez J, Lessler J, Lee EC
Scientific reports  ·  06 Apr 2021  ·  doi:10.1038/s41598-021-86811-0
Factors Associated With PCSK9 Inhibitor Initiation Among US Veterans.
Catherine G Derington, Lisandro D Colantonio, Jennifer S Herrick, James Cook, Jordan B King, …, Vanessa W Stevens, Richard E Nelson, Megan E Vanneman, Paul Muntner, Adam P Bress
Journal of the American Heart Association  ·  06 Apr 2021  ·  doi:10.1161/jaha.120.019254
Limited Genetic Diversity Detected in Middle East Respiratory Syndrome-Related Coronavirus Variants Circulating in Dromedary Camels in Jordan.
Seifert SN, Schulz JE, Ricklefs S, Letko M, Yabba E, …, Steel J, Abu-Basha EA, Al-Majali AM, van Doremalen N, Munster VJ
Viruses  ·  30 Mar 2021  ·  doi:10.3390/v13040592
Automated Travel History Extraction From Clinical Notes for Informing the Detection of Emergent Infectious Disease Events: Algorithm Development and Validation
Kelly S Peterson, Julia Lewis, Olga V Patterson, Alec B Chapman, Daniel W Denhalter, …, Vanessa W Stevens, Shantini D Gamage, Gary A Roselle, Katherine S Wallace, Makoto Jones
JMIR PUBLIC HEALTH AND SURVEILLANCE  ·  24 Mar 2021  ·  doi:10.2196/26719
Cost-effectiveness analysis of neoadjuvant immune checkpoint inhibition vs. cisplatin-based chemotherapy in muscle invasive bladder cancer.
Ali Raza Khaki, Yong Shan, Richard E Nelson, Sapna Kaul, John L Gore, Petros Grivas, Stephen B Williams
Urologic oncology  ·  23 Mar 2021  ·  doi:10.1016/j.urolonc.2021.03.004
Psychological Stress Risk Factors, Concerns and Mental Health Support Among Health Care Workers in Vietnam During the Coronavirus Disease 2019 (COVID-19) Outbreak.
Nguyen PTL, Nguyen TBL, Pham AG, Duong KNC, Gloria MAJ, Vo TV, Vo BV, Phung TL
Frontiers in public health  ·  19 Mar 2021  ·  doi:10.3389/fpubh.2021.628341
Ciprofloxacin-induced cutaneous adverse drug events: a systematic review of descriptive studies.
Kashyap A, Sreenivasan S, Rajan AK, Rashid M, Chhabra M
Journal of basic and clinical physiology and pharmacology  ·  16 Mar 2021  ·  doi:10.1515/jbcpp-2020-0115
Correction: Psychological Impacts of COVID-19 During the First Nationwide Lockdown in Vietnam: Web-Based, Cross-Sectional Survey Study.
Ngoc Cong Duong K, Nguyen Le Bao T, Thi Lan Nguyen P, Vo Van T, Phung Lam T, Pham Gia A, Anuratpanich L, Vo Van B
JMIR formative research  ·  05 Mar 2021  ·  doi:10.2196/28357
Correction: Psychological Impacts of COVID-19 During the First Nationwide Lockdown in Vietnam: Web-Based, Cross-Sectional Survey Study (Preprint)
Khanh Ngoc Cong Duong, Tien Nguyen Le Bao, Phuong Thi Lan Nguyen, Thanh Vo Van, Toi Phung Lam, Anh Pham Gia, Luerat Anuratpanich, Bay Vo Van
Preprint  ·  02 Mar 2021  ·  doi:10.2196/preprints.28357
Association Between Contact Precautions and Transmission of Methicillin-Resistant Staphylococcus aureus in Veterans Affairs Hospitals.
Khader K, Thomas A, Stevens V, Visnovsky L, Nevers M, Toth D, Keegan LT, Jones M, Rubin M, Samore MH
JAMA network open  ·  01 Mar 2021  ·  doi:10.1001/jamanetworkopen.2021.0971
The Impact of Halting Elective Admissions in Anticipation of a Demand Surge Due to the Coronavirus Pandemic (COVID-19).
Martin BI, Brodke DS, Wilson FA, Chaiyakunapruk N, Nelson RE
Medical care  ·  01 Mar 2021  ·  doi:10.1097/mlr.0000000000001496
The Urgent Need for Public Health Preparedness Funding and Support.
Linda C Degutis, Kimberley Shoaf, Tomás J Aragón, Christopher Atchison, David Dyjack, …, Jonathan Links, Debra Olson, Margaret Potter, Jack Thompson, Bernard Turnock
American journal of public health  ·  01 Mar 2021  ·  doi:10.2105/ajph.2020.306068
Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees.
Vega Yon GG, Thomas DC, Morrison J, Mi H, Thomas PD, Marjoram P
PLoS computational biology  ·  18 Feb 2021  ·  doi:10.1371/journal.pcbi.1007948
Epidemiology, Disposition, and Treatment of Ambulatory Veterans With Skin and Soft Tissue Infections.
Jamie L W Rhoads, Tina M Willson, Jesse D Sutton, Emily S Spivak, Matthew H Samore, Vanessa W Stevens
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  16 Feb 2021  ·  doi:10.1093/cid/ciaa133
Oral Step-Down Therapy With Levofloxacin for Febrile Neutropenia in Children With Cancer.
Jared Olson, Sonia Mehra, Adam L Hersh, Emily A Thorell, Gregory J Stoddard, Luke Maese, Phillip E Barnette, Richard S Lemons, Andrew T Pavia, Elizabeth D Knackstedt
Journal of the Pediatric Infectious Diseases Society  ·  13 Feb 2021  ·  doi:10.1093/jpids/piaa015
Pneumonia Severity in Children: Utility of Procalcitonin in Risk Stratification.
Laura F Sartori, Yuwei Zhu, Carlos G Grijalva, Krow Ampofo, Per Gesteland, …, Rendie McHenry, Donald H Arnold, Andrew T Pavia, Kathryn M Edwards, Derek J Williams
Hospital pediatrics  ·  12 Feb 2021  ·  doi:10.1542/hpeds.2020-001842
Robust Testing in Outpatient Settings to Explore COVID-19 Epidemiology: Disparities in Race/Ethnicity and Age, Salt Lake County, Utah, 2020.
Ahmed SM, Shah RU, Fernandez V, Grineski S, Brintz B, Samore MH, Ferrari MJ, Leung DT, Keegan LT
Public health reports (Washington, D.C. : 1974)  ·  04 Feb 2021  ·  doi:10.1177/0033354920988612
A modular approach to integrating multiple data sources into real-time clinical prediction for pediatric diarrhea.
Brintz BJ, Haaland B, Howard J, Chao DL, Proctor JL, …, Platts-Mills JA, Nelson EJ, Levine AC, Pavia AT, Leung DT
eLife  ·  02 Feb 2021  ·  doi:10.7554/elife.63009
Association of Temporary Financial Assistance With Housing Stability Among US Veterans in the Supportive Services for Veteran Families Program.
Richard E Nelson, Thomas H Byrne, Ying Suo, James Cook, Warren Pettey, …, Tom Greene, Lillian Gelberg, Stefan G Kertesz, Jack Tsai, Ann Elizabeth Montgomery
JAMA network open  ·  01 Feb 2021  ·  doi:10.1001/jamanetworkopen.2020.37047
Presence of Antibodies Against Haemophilus influenzae Serotype a in Alaska Before and After the Emergence of Invasive Infections.
McClure M, Miernyk K, Bruden D, Rudolph K, Hennessy TW, Bruce MG, Nolen LD
The Journal of infectious diseases  ·  01 Feb 2021  ·  doi:10.1093/infdis/jiaa369
Attributable Cost of Healthcare-Associated Methicillin-Resistant Staphylococcus aureus Infection in a Long-term Care Center.
Nelson RE, Lautenbach E, Chang N, Jones M, Willson T, David M, Linkin D, Glick H, Doshi JA, Stevens VW
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  29 Jan 2021  ·  doi:10.1093/cid/ciaa1582
Economic Evaluations of New Antibiotics: The High Potential Value of Reducing Healthcare Transmission Through Decolonization.
Damon J A Toth, Matthew H Samore, Richard E Nelson
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  29 Jan 2021  ·  doi:10.1093/cid/ciaa1590
Effectiveness of Contact Precautions to Prevent Transmission of Methicillin-Resistant Staphylococcus aureus and Vancomycin-Resistant Enterococci in Intensive Care Units.
Khader K, Thomas A, Huskins WC, Stevens V, Keegan LT, Visnovsky L, Samore MH
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  29 Jan 2021  ·  doi:10.1093/cid/ciaa1603
Environmental Contamination of Contact Precaution and Non-Contact Precaution Patient Rooms in Six Acute Care Facilities.
Windy D Tanner, Molly K Leecaster, Yue Zhang, Kristina M Stratford, Jeanmarie Mayer, …, Colleen Macke, Patti Roman, Sarah L Krein, Catherine Loc-Carrillo, Matthew H Samore
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  29 Jan 2021  ·  doi:10.1093/cid/ciaa1602
Expanding an Economic Evaluation of the Veterans Affairs (VA) Methicillin-resistant Staphylococcus aureus (MRSA) Prevention Initiative to Include Prevention of Infections From Other Pathogens.
Nelson RE, Goto M, Samore MH, Jones M, Stevens VW, Evans ME, Schweizer ML, Perencevich EN, Rubin MA
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  29 Jan 2021  ·  doi:10.1093/cid/ciaa1591
Matching Methods to Problems: Using Data Science and Transmission Modeling to Combat Antimicrobial Resistance.
Michael A Rubin, Richard E Nelson, Matthew H Samore
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  29 Jan 2021  ·  doi:10.1093/cid/ciaa1691
National Estimates of Healthcare Costs Associated With Multidrug-Resistant Bacterial Infections Among Hospitalized Patients in the United States.
Richard E Nelson, Kelly M Hatfield, Hannah Wolford, Matthew H Samore, R Douglas Scott, Sujan C Reddy, Babatunde Olubajo, Prabasaj Paul, John A Jernigan, James Baggs
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  29 Jan 2021  ·  doi:10.1093/cid/ciaa1581
Simulated Adoption of 2019 Community-Acquired Pneumonia Guidelines Across 114 Veterans Affairs Medical Centers: Estimated Impact on Culturing and Antibiotic Selection in Hospitalized Patients.
Christensen MA, Nevers M, Ying J, Haroldsen C, Stevens V, …, Goetz MB, Restrepo MI, Madaras-Kelly K, Samore MH, Jones BE
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  29 Jan 2021  ·  doi:10.1093/cid/ciaa1604
Transmission Dynamics of Clostridioides difficile in 2 High-Acuity Hospital Units.
Khader K, Munoz-Price LS, Hanson R, Stevens V, Keegan LT, Thomas A, Pezzin LE, Nattinger A, Singh S, Samore MH
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  29 Jan 2021  ·  doi:10.1093/cid/ciaa1580
Insights From Experiments With Rigor in an EvoBio Design Study.
Rogers J, Patton AH, Harmon L, Lex A, Meyer M
IEEE transactions on visualization and computer graphics  ·  28 Jan 2021  ·  doi:10.1109/tvcg.2020.3030405
Social dynamics of a population-level dashboard for antimicrobial stewardship: A qualitative analysis.
Taber P, Weir C, Butler JM, Graber CJ, Jones MM, …, Zhang Y, Chou AF, Samore MH, Goetz MB, Glassman PA
American journal of infection control  ·  27 Jan 2021  ·  doi:10.1016/j.ajic.2021.01.015
Clinical Features of Human Metapneumovirus-Associated Community-acquired Pneumonia Hospitalizations.
Leigh M Howard, Kathryn M Edwards, Yuwei Zhu, Carlos G Grijalva, Wesley H Self, …, Sandra R Arnold, Jonathan A McCullers, Evan J Anderson, Richard G Wunderink, Derek J Williams
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  23 Jan 2021  ·  doi:10.1093/cid/ciaa088
Efficient SARS-CoV-2 surveillance strategies to prevent deadly outbreaks in vulnerable populations.
Damon J A Toth, Karim Khader
BMC medicine  ·  22 Jan 2021  ·  doi:10.1186/s12916-020-01886-2
Prediction of Apple Leaf Diseases Using Multiclass Support Vector Machine
Soarov Chakraborty, Shourav Paul, Md. Rahat-uz-Zaman
2021 2nd International Conference on Robotics, Electrical and Signal Processing Techniques (ICREST)  ·  05 Jan 2021  ·  doi:10.1109/icrest51555.2021.9331132
Better Bunching, Nicer Notching
Marinho Bertanha, Andrew H. McCallum, Nathan Seegert
Finance and Economics Discussion Series  ·  01 Jan 2021  ·  doi:10.17016/feds.2021.002
Bunching Estimation of Elasticities Using Stata
Marinho Bertanha, Andrew H. McCallum, Alexis Payne, Nathan Seegert
Finance and Economics Discussion Series  ·  01 Jan 2021  ·  doi:10.17016/feds.2021.006
Exponential random graph models for little networks
George G. Vega Yon, Andrew Slaughter, Kayla de la Haye
Social Networks  ·  01 Jan 2021  ·  doi:10.1016/j.socnet.2020.07.005
Survival Benefits of N-Acetylcysteine in Rodenticide Poisoning: Retrospective Evidence from an Indian Tertiary Care Setting.
Mark K, Hyder S, Rashid M, Chandran VP, Seshadri S, Seshadri S, Nair S, Thunga G
Current reviews in clinical and experimental pharmacology  ·  01 Jan 2021  ·  doi:10.2174/1574884715666200513090634

2020

Clinical and Molecular Epidemiology of Invasive Haemophilus influenzae Serotype a Infections in Utah Children.
Hillary Crandall, Jennifer Christiansen, Alyssa A Varghese, Adam Russon, E Kent Korgenski, …, Elizabeth D Knackstedt, Judy A Daly, Krow Ampofo, Andrew T Pavia, Anne J Blaschke
Journal of the Pediatric Infectious Diseases Society  ·  30 Dec 2020  ·  doi:10.1093/jpids/piz088
TRANSIENT DYNAMICS OF THE KIDNEY DISEASE EPIDEMIC AMONG HIV-INFECTED INDIVIDUALS
Dylan Hull-Nye, Bhawna Malik, Ravikiran Keshavamurthy, Elissa J. Schwartz
Mathematics in Applied Sciences and Engineering  ·  24 Dec 2020  ·  doi:10.5206/mase/10852
MrIML: Multi-response interpretable machine learning to map genomic landscapes
Fountain-Jones N, Kozakiewicz C, Forester B, Landguth E, Carver S, …, Kraberger S, Trumbo D, Mayer M, Clark N, Machado G
[no publisher info]  ·  21 Dec 2020  ·  doi:10.22541/au.160855820.09604024/v1
Changes in the accuracy of administrative data for the detection of surgical site infections.
Brian T Bucher, Meng Yang, Julie Arndorfer, Cherie Frame, Jan Orton, Matthew H Samore, Kristin K Dascomb
Infection control and hospital epidemiology  ·  17 Dec 2020  ·  doi:10.1017/ice.2020.1346
Psychological Impacts of COVID-19 During the First Nationwide Lockdown in Vietnam: Web-Based, Cross-Sectional Survey Study.
Ngoc Cong Duong K, Nguyen Le Bao T, Thi Lan Nguyen P, Vo Van T, Phung Lam T, Pham Gia A, Anuratpanich L, Vo Van B
JMIR formative research  ·  15 Dec 2020  ·  doi:10.2196/24776
Identification of patients at risk of Clostridioides difficile infection for enrollment in vaccine clinical trials.
Vanessa W Stevens, Ellyn M Russo, Yinong Young-Xu, Molly Leecaster, Yue Zhang, …, Bing Cai, Elisa N Gonzalez, Dale N Gerding, Jody Lawrence, Matthew H Samore
Vaccine  ·  14 Dec 2020  ·  doi:10.1016/j.vaccine.2020.12.016
Carbapenem-resistant Enterobacteriaceae epidemiology in Veterans' Affairs medical centers varies by facility characteristics.
Wirth MS, Fitzpatrick MA, Suda KJ, Wilson GM, Ramanathan S, Evans ME, Jones MM, Pfeiffer CD, Evans CT
Infection control and hospital epidemiology  ·  11 Dec 2020  ·  doi:10.1017/ice.2020.1323
The effect of Bertholletia excelsa on body weight, cholestrol, and c-reactive protein: A systematic review and meta-analysis of randomized controlled trials.
Hou L, Rashid M, Chhabra M, Chandrasekhar B, Amirthalingam P, Ray S, Li Z
Complementary therapies in medicine  ·  30 Nov 2020  ·  doi:10.1016/j.ctim.2020.102636
Seasonal patterns of dengue incidence in Thailand across the urban-rural gradient
Bi Q, Cummings DA, Reich NG, Keegan LT, Kaminsky J, Salje H, Clapham H, Doung-ngern P, Iamsirithaworn S, Lessler J
medRxiv  ·  27 Nov 2020  ·  doi:10.1101/2020.11.25.20186056
Potentially Inappropriate Medication Use in Older Hospitalized Patients with Type 2 Diabetes: A Cross-Sectional Study.
Sharma R, Chhabra M, Vidyasagar K, Rashid M, Fialova D, Bhagavathula AS
Pharmacy (Basel, Switzerland)  ·  17 Nov 2020  ·  doi:10.3390/pharmacy8040219
Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic Immunocompromised Individual with Cancer.
Avanzato VA, Matson MJ, Seifert SN, Pryce R, Williamson BN, …, Martens C, Bowden TA, de Wit E, Riedo FX, Munster VJ
Cell  ·  04 Nov 2020  ·  doi:10.1016/j.cell.2020.10.049
Inpatient antibiotic utilization in the Veterans' Health Administration during the coronavirus disease 2019 (COVID-19) pandemic.
Dieringer TD, Furukawa D, Graber CJ, Stevens VW, Jones MM, Rubin MA, Goetz MB
Infection control and hospital epidemiology  ·  20 Oct 2020  ·  doi:10.1017/ice.2020.1277
The impact of TV rating on Twitter's activity: Evidence for Chile based on the Teleton 2012,El impacto del rating televisivo sobre la actividad en Twitter: evidencia para Chile sobre la base del evento Teletón 2012
Universidad Adolfo Ibáñez (Chile), Jorge Fábrega, George Vega, NodosChile (Chile)
Cuadernos Info  ·  20 Oct 2020  ·  doi:10.7764/cdi.33.533
An Efficient Data Retrieval Parallel Reeb Graph Algorithm
Mustafa Hajij, Paul Rosen
Algorithms  ·  12 Oct 2020  ·  doi:10.3390/a13100258
Clinical predictors for etiology of acute diarrhea in children in resource-limited settings.
Ben J Brintz, Joel I Howard, Benjamin Haaland, James A Platts-Mills, Tom Greene, Adam C Levine, Eric J Nelson, Andrew T Pavia, Karen L Kotloff, Daniel T Leung
PLoS neglected tropical diseases  ·  09 Oct 2020  ·  doi:10.1371/journal.pntd.0008677
Psychological Impacts of COVID-19 During the First Nationwide Lockdown in Vietnam: Web-Based, Cross-Sectional Survey Study (Preprint)
Khanh Ngoc Cong Duong, Tien Nguyen Le Bao, Phuong Thi Lan Nguyen, Thanh Vo Van, Toi Phung Lam, Anh Pham Gia, Luerat Anuratpanich, Bay Vo Van
Preprint  ·  07 Oct 2020  ·  doi:10.2196/preprints.24776
Antimicrobial Stewardship Programs and Antibiotic Usage and Resistance in Department of Veterans' Affairs Medical Centers
Hope Palalay, Allison Kelly, Loretta Simbartl, Shantini Gamage, Makoto Jones, Gary Roselle
INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY  ·  01 Oct 2020  ·  doi:10.1017/ice.2020.632
Appropriateness of Anti-MRSA Therapy in Hospitalized Patients With Suspected Community-Onset Infections
Sydney Springer, Muriel Burk, Kelly Echevarria, Makoto Jones, Matthew Goetz
INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY  ·  01 Oct 2020  ·  doi:10.1017/ice.2020.635
Development of an Electronic Tool to Measure Daily Appropriateness of Inpatient Antibacterial Use
Vanessa Stevens, Pamela Belperio, Melinda Neuhauser, Lauri Hicks, McKenna Nevers, Matthew Goetz, Nai-Chung Chang, Arjun Srinivasan, Makoto Jones
INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY  ·  01 Oct 2020  ·  doi:10.1017/ice.2020.473
Laboratory Testing, Diagnostic Coding, and Treatment for Electronic Identification of Clostridioides difficile Infection
Vanessa Stevens, Andrea Benin, Raymund Dantes, Karim Khader, Sean Nugent, …, Rui Zhang, Steven Fu, Makoto Jones, Daniel Pollock, Steven Waisbren
INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY  ·  01 Oct 2020  ·  doi:10.1017/ice.2020.897
Oral β-Lactam Antibiotics vs Fluoroquinolones or Trimethoprim-Sulfamethoxazole for Definitive Treatment of Enterobacterales Bacteremia From a Urine Source.
Jesse D Sutton, Vanessa W Stevens, Nai-Chung N Chang, Karim Khader, Tristan T Timbrook, Emily S Spivak
JAMA network open  ·  01 Oct 2020  ·  doi:10.1001/jamanetworkopen.2020.20166
Pneumonia and Electronic Health Records-A Window Into Disease, A Mirror of Our Behavior, or Just Another Streetlight?
Jones BE, Jones MM
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Oct 2020  ·  doi:10.1093/cid/ciz1053
Portable Automated Surveillance of Surgical Site Infections Using Natural Language Processing: Development and Validation.
Brian T Bucher, Jianlin Shi, Jeffrey P Ferraro, David E Skarda, Matthew H Samore, John F Hurdle, Adi V Gundlapalli, Wendy W Chapman, Samuel R G Finlayson
Annals of surgery  ·  01 Oct 2020  ·  doi:10.1097/sla.0000000000004133
Predicting COVID-19 using past pandemics as a guide: how reliable were mathematical models then, and how reliable will they be now?
Costris-Vas C, Schwartz EJ, Smith R
Mathematical biosciences and engineering : MBE  ·  01 Oct 2020  ·  doi:10.3934/mbe.2020383
Risk Factors for Carbapenemase Producing-Carbapenem Resistant Enterobacteriaceae in Those With CRE Positive Cultures
Geneva Wilson, Christopher Pfeiffer, Margaret Fitzpatrick, Katie Suda, Brian Bartle, Michael Rubin, Eli Perencevich, Charlesnika Evans
INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY  ·  01 Oct 2020  ·  doi:10.1017/ice.2020.1008
Trrack: A Library for Provenance-Tracking in Web-Based Visualizations
Zach Cutler, Kiran Gadhave, Alexander Lex
2020 IEEE Visualization Conference (VIS)  ·  01 Oct 2020  ·  doi:10.1109/vis47514.2020.00030
A survey of infection control strategies for carbapenem-resistant Enterobacteriaceae in Department of Veterans' Affairs facilities.
Ramanathan S, Suda KJ, Fitzpatrick MA, Guihan M, Goedken CC, …, Pfeiffer CD, Perencevich EN, Rubin M, Evans CT, QUERI CARRIAGE Program
Infection control and hospital epidemiology  ·  22 Sep 2020  ·  doi:10.1017/ice.2020.328
The Enduring Health Consequences of Combat Trauma: a Legacy of Chronic Disease.
Stewart IJ, Poltavskiy E, Howard JT, Janak JC, Pettey W, …, Sim A, Suo Y, Redd A, Chung KK, Gundlapalli A
Journal of general internal medicine  ·  21 Sep 2020  ·  doi:10.1007/s11606-020-06195-1
Developing an Environmental Health Sciences COVID-19 Research Agenda: Results from the NIEHS Disaster Research Response (DR2) Work Group's Modified Delphi Method.
Nicole A Errett, Marilyn Howarth, Kimberley Shoaf, Megan Couture, Steven Ramsey, Richard Rosselli, Sara Webb, April Bennett, Aubrey Miller
International journal of environmental research and public health  ·  19 Sep 2020  ·  doi:10.3390/ijerph17186842
Clinical and molecular epidemiology of invasive Staphylococcus aureus infection in Utah children; continued dominance of MSSA over MRSA.
Hillary Crandall, Aurélie Kapusta, Jarrett Killpack, Carly Heyrend, Kody Nilsson, …, Andrew T Pavia, Matthew A Mulvey, Mark Yandell, Kristina G Hulten, Anne J Blaschke
PloS one  ·  18 Sep 2020  ·  doi:10.1371/journal.pone.0238991
Beyond Infection: Integrating Competence into Reservoir Host Prediction.
Becker DJ, Seifert SN, Carlson CJ
Trends in ecology & evolution  ·  11 Sep 2020  ·  doi:10.1016/j.tree.2020.08.014
Factors That Contribute to Cost Differences Based on ICU of Admission in Neonates Undergoing Congenital Heart Surgery: A Novel Decomposition Analysis.
Joyce T Johnson, Kirsen L Sullivan, Richard E Nelson, Xiaoming Sheng, Tom H Greene, David K Bailly, Aaron W Eckhauser, Bradley S Marino, L LuAnn Minich, Nelangi M Pinto
Pediatric critical care medicine : a journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies  ·  01 Sep 2020  ·  doi:10.1097/pcc.0000000000002507
What Protective Health Measures Are Americans Taking in Response to COVID-19? Results from the COVID Impact Survey.
Fares Qeadan, Nana Akofua Mensah, Benjamin Tingey, Rona Bern, Tracy Rees, Sharon Talboys, Tejinder Pal Singh, Steven Lacey, Kimberley Shoaf
International journal of environmental research and public health  ·  29 Aug 2020  ·  doi:10.3390/ijerph17176295
Ensemble Forecasts of Coronavirus Disease 2019 (COVID-19) in the U.S.
Ray EL, Wattanachit N, Niemi J, Kanji AH, House K, …, Slayton R, Lopez V, Biggerstaff M, Johansson MA, Reich NG
medRxiv  ·  22 Aug 2020  ·  doi:10.1101/2020.08.19.20177493
The trade-off dilemma in pharmacotherapy of COVID-19: systematic review, meta-analysis, and implications.
Khan S, Gionfriddo MR, Cortes-Penfield N, Thunga G, Rashid M
Expert opinion on pharmacotherapy  ·  04 Aug 2020  ·  doi:10.1080/14656566.2020.1792884
Decreases in Antimicrobial Use Associated With Multihospital Implementation of Electronic Antimicrobial Stewardship Tools.
Graber CJ, Jones MM, Goetz MB, Madaras-Kelly K, Zhang Y, …, Weir C, Chou AF, Youn SY, Samore MH, Glassman PA
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Aug 2020  ·  doi:10.1093/cid/ciz941
Modeling the potential impact of administering vaccines against Clostridioides difficile infection to individuals in healthcare facilities.
Toth DJA, Keegan LT, Samore MH, Khader K, O’Hagan JJ, Yu H, Quintana A, Swerdlow DL
Vaccine  ·  21 Jul 2020  ·  doi:10.1016/j.vaccine.2020.06.081
Cost-Effectiveness of Nusinersen and Universal Newborn Screening for Spinal Muscular Atrophy.
Ali Jalali, Erin Rothwell, Jeffrey R Botkin, Rebecca A Anderson, Russell J Butterfield, Richard E Nelson
The Journal of pediatrics  ·  11 Jul 2020  ·  doi:10.1016/j.jpeds.2020.07.033
Modeling reductions in SARS-CoV-2 transmission and hospital burden achieved by prioritizing testing using a clinical prediction rule
Reimer JR, Ahmed SM, Brintz B, Shah RU, Keegan LT, Ferrari MJ, Leung DT
medRxiv  ·  08 Jul 2020  ·  doi:10.1101/2020.07.07.20148510
Characterizing Sub-Cohorts via Data Normalization and Representation Learning
Everett Rush, Ozgur Ozmen, Kathryn Knight, Byung Park, Clifton Baker, Makoto Jones, Merry Ward, Jonathan Nebeker
2020 IEEE 33RD INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS(CBMS 2020)  ·  01 Jul 2020  ·  doi:10.1109/cbms49503.2020.00040
Converting Clinical Pathways to BPM plus Standards: A Case Study in Stable Ischemic Heart Disease
Junghoon Chae, Byung Hoon Park, Makoto Jones, Merry Ward, Jonathan Nebeker
2020 IEEE 33RD INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS(CBMS 2020)  ·  01 Jul 2020  ·  doi:10.1109/cbms49503.2020.00092
Cost of Elective Labor Induction Compared With Expectant Management in Nulliparous Women.
Brett D Einerson, Richard E Nelson, Grecio Sandoval, M Sean Esplin, D Ware Branch, …, Robert M Silver, William A Grobman, Uma M Reddy, Michael Varner, Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) Maternal-Fetal Medicine Units (…
Obstetrics and gynecology  ·  01 Jul 2020  ·  doi:10.1097/aog.0000000000003930
Cost-Effectiveness of Operative Versus Nonoperative Management of Patients With Intra-articular Calcaneal Fractures.
Stephanie R Albin, Brandon K Bellows, Drew H Van Boerum, Stephen Hunter, Shane L Koppenhaver, Richard E Nelson, Robin Marcus, Lee Dibble, Mark Cornwall, Julie M Fritz
Journal of orthopaedic trauma  ·  01 Jul 2020  ·  doi:10.1097/bot.0000000000001731
Use of Oral Vancomycin for Clostridioides difficile Infection and the Risk of Vancomycin-Resistant Enterococci.
Stevens VW, Khader K, Echevarria K, Nelson RE, Zhang Y, Jones M, Timbrook TT, Samore MH, Rubin MA
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Jul 2020  ·  doi:10.1093/cid/ciz871
Corrigendum to "Network influences on policy implementation: Evidence from a global health treaty" [Soc. Sci. Med.] 222 (February 2019) 188-197.
Valente TW, Pitts S, Wipfli H, Vega Yon GG
Social science & medicine (1982)  ·  23 Jun 2020  ·  doi:10.1016/j.socscimed.2019.03.041
Effectiveness of Copper-Impregnated Solid Surfaces on Lowering Microbial Bio-Burden Levels in an Acute Care Hospital.
Piyali Chatterjee, Marjory D Williams, John D Coppin, Yonhui Allton, Hosoon Choi, Julie Ann D Martel, John E Zeber, Richard E Nelson, Curtis J Donskey, Chetan Jinadatha
Open forum infectious diseases  ·  19 Jun 2020  ·  doi:10.1093/ofid/ofaa238
Inappropriate Medication Use and Cost Comparison Analysis of Proton Pump Inhibitors: Evidence from an Indian Tertiary Care Facility.
Venkataraman R, Rashid M, Shrestha H
Current drug safety  ·  19 Jun 2020  ·  doi:10.2174/1574886315666200311120151
Perspectives of Physician and Pharmacist Stewards on Successful Antibiotic Stewardship Program Implementation: A Qualitative Study.
Tamar F Barlam, Ellen Childs, Sarah A Zieminski, Tsega M Meshesha, Kathryn E Jones, …, Matthew H Samore, Jincheng Shen, Edward Stenehjem, Yue Zhang, Mari-Lynn Drainoni
Open forum infectious diseases  ·  15 Jun 2020  ·  doi:10.1093/ofid/ofaa229
Planning for the aftershocks: a model of post-acute care needs for hospitalized COVID-19 patients
Maloney M, Morley R, Checketts R, Weir P, Barfuss D, Meredith HR, Hofmann MG, Samore MH, Keegan LT
medRxiv  ·  13 Jun 2020  ·  doi:10.1101/2020.06.12.20129551
Bat-borne virus diversity, spillover and emergence.
Letko M, Seifert SN, Olival KJ, Plowright RK, Munster VJ
Nature reviews. Microbiology  ·  11 Jun 2020  ·  doi:10.1038/s41579-020-0394-z
Response to Apewokin and Onyishi.
Andrew T Pavia, Michael G Ison, Cameron R Wolfe, Timothy M Uyeki
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  10 Jun 2020  ·  doi:10.1093/cid/ciz839
Effect of Environmental Conditions on SARS-CoV-2 Stability in Human Nasal Mucus and Sputum.
Matson MJ, Yinda CK, Seifert SN, Bushmaker T, Fischer RJ, van Doremalen N, Lloyd-Smith JO, Munster VJ
Emerging infectious diseases  ·  08 Jun 2020  ·  doi:10.3201/eid2609.202267
Shedding of multidrug-resistant gram-negative bacilli by colonized patients during procedures and patient care activities.
Heba Alhmidi, Jennifer L Cadnum, Sreelatha Koganti, Annette L Jencson, Robert A Bonomo, Brigid M Wilson, JeanMarie Mayer, Matthew H Samore, Curtis J Donskey
American journal of infection control  ·  06 Jun 2020  ·  doi:10.1016/j.ajic.2020.06.004
Effectiveness of N95 Respirator Decontamination and Reuse against SARS-CoV-2 Virus.
Fischer RJ, Morris DH, van Doremalen N, Sarchette S, Matson MJ, …, Williamson BN, Judson SD, de Wit E, Lloyd-Smith JO, Munster VJ
Emerging infectious diseases  ·  03 Jun 2020  ·  doi:10.3201/eid2609.201524
Cost-Effectiveness Analysis Comparing Proximal Row Carpectomy and Four-Corner Arthrodesis.
Minkyoung Yoo, Richard E Nelson, Damian A Illing, Brook I Martin, Andrew R Tyser, Nikolas H Kazmers
JB & JS open access  ·  02 Jun 2020  ·  doi:10.2106/jbjs.oa.19.00080
Clinical and Epidemiological Aspects of Diphtheria: A Systematic Review and Pooled Analysis.
Truelove SA, Keegan LT, Moss WJ, Chaisson LH, Macher E, Azman AS, Lessler J
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Jun 2020  ·  doi:10.1093/cid/ciz808
Evaluation of clinicians' knowledge, attitudes, and planned behaviors related to an intervention to improve acute respiratory infection management.
Hayli R Hruza, Tania Velasquez, Karl J Madaras-Kelly, Katherine E Fleming-Dutra, Matthew H Samore, Jorie M Butler
Infection control and hospital epidemiology  ·  01 Jun 2020  ·  doi:10.1017/ice.2020.42
On the automatic annotation of gene functions using observational data and phylogenetic trees
Vega Yon GG, Thomas DC, Morrison J, Mi H, Thomas PD, Marjoram P
bioRxiv  ·  14 May 2020  ·  doi:10.1101/2020.05.14.095687
The real time effective reproductive number for COVID-19 in the United States
Zhang Y, Keegan LT, Yuqing Q, Samore MH
medRxiv  ·  13 May 2020  ·  doi:10.1101/2020.05.08.20095703
Prevalence of IgG antibodies to SARS-CoV-2 among emergency department employees.
Troy Madsen, Nicholas Levin, Karla Niehus, Karen Law, Jeanmarie Mayer, Matthew Chapman, Austin Johnson, Stephen Hartsell
The American journal of emergency medicine  ·  03 May 2020  ·  doi:10.1016/j.ajem.2020.04.076
A Novel Field-Deployable Method for Sequencing and Analyses of Henipavirus Genomes From Complex Samples on the MinION Platform.
Yinda CK, Seifert SN, Macmenamin P, van Doremalen N, Kim L, Bushmaker T, de Wit E, Quinones M, Munster VJ
The Journal of infectious diseases  ·  01 May 2020  ·  doi:10.1093/infdis/jiz576
Rousettus aegyptiacus Bats Do Not Support Productive Nipah Virus Replication.
Seifert SN, Letko MC, Bushmaker T, Laing ED, Saturday G, Meade-White K, van Doremalen N, Broder CC, Munster VJ
The Journal of infectious diseases  ·  01 May 2020  ·  doi:10.1093/infdis/jiz429
Serological Evidence for Henipa-like and Filo-like Viruses in Trinidad Bats.
Schulz JE, Seifert SN, Thompson JT, Avanzato V, Sterling SL, …, Laing ED, Broder CC, Carrington CVF, Schountz T, Munster VJ
The Journal of infectious diseases  ·  01 May 2020  ·  doi:10.1093/infdis/jiz648
Inpatient and Discharge Fluoroquinolone Prescribing in Veterans Affairs Hospitals Between 2014 and 2017.
Valerie M Vaughn, Sarah M Seelye, Xiao Qing Wang, Wyndy L Wiitala, Michael A Rubin, Hallie C Prescott
Open forum infectious diseases  ·  30 Apr 2020  ·  doi:10.1093/ofid/ofaa149
Evaluating Multivariate Network Visualization Techniques Using a Validated Design and Crowdsourcing Approach
Carolina Nobre, Dylan Wootton, Lane Harrison, Alexander Lex
Proceedings of the 2020 CHI Conference on Human Factors in Computing Systems  ·  21 Apr 2020  ·  doi:10.1145/3313831.3376381
Respiratory syncytial virus and influenza hospitalizations in Alaska native adults.
Nolen LD, Seeman S, Desnoyers C, DeByle C, Klejka J, …, Patel M, Englund J, Chu HY, Tiesinga J, Singleton R
Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology  ·  18 Apr 2020  ·  doi:10.1016/j.jcv.2020.104347
Naive Forecast for COVID-19 in Utah Based on the South Korea and Italy Models-the Fluctuation between Two Extremes.
Fares Qeadan, Trenton Honda, Lisa H Gren, Jennifer Dailey-Provost, L Scott Benson, James A VanDerslice, Christina A Porucznik, A Blake Waters, Steven Lacey, Kimberley Shoaf
International journal of environmental research and public health  ·  16 Apr 2020  ·  doi:10.3390/ijerph17082750
The Epidemiological Implications of Jails for Community, Corrections Officer, and Incarcerated Population Risks from COVID-19
Lofgren E, Lum K, Horowitz A, Madubuonwu B, Myers K, Fefferman NH
medRxiv  ·  14 Apr 2020  ·  doi:10.1101/2020.04.08.20058842
Antibiotic Prescribing Variability in a Large Urgent Care Network: A New Target for Outpatient Stewardship.
Edward Stenehjem, Anthony Wallin, Katherine E Fleming-Dutra, Whitney R Buckel, Valoree Stanfield, …, Jeff Sorensen, Matthew H Samore, Raj Srivastava, Lauri A Hicks, Adam L Hersh
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  10 Apr 2020  ·  doi:10.1093/cid/ciz910
Multidrug-Resistant Bacterial Infections in U.S. Hospitalized Patients, 2012-2017.
John A Jernigan, Kelly M Hatfield, Hannah Wolford, Richard E Nelson, Babatunde Olubajo, …, L Clifford McDonald, Alex Kallen, Anthony Fiore, Michael Craig, James Baggs
The New England journal of medicine  ·  02 Apr 2020  ·  doi:10.1056/nejmoa1914433
Empirical Anti-MRSA vs Standard Antibiotic Therapy and Risk of 30-Day Mortality in Patients Hospitalized for Pneumonia.
Jones BE, Ying J, Stevens V, Haroldsen C, He T, …, Yarbrough PM, Jones MM, Goetz MB, Greene T, Samore MH
JAMA internal medicine  ·  01 Apr 2020  ·  doi:10.1001/jamainternmed.2019.7495
Taggle: Combining overview and details in tabular data visualizations
Katarina Furmanova, Samuel Gratzl, Holger Stitz, Thomas Zichner, Miroslava Jaresova, Alexander Lex, Marc Streit
Information Visualization  ·  01 Apr 2020  ·  doi:10.1177/1473871619878085
Duty to Plan: Health Care, Crisis Standards of Care, and Novel Coronavirus SARS-CoV-2.
John L Hick, Dan Hanfling, Matthew K Wynia, Andrew T Pavia
NAM perspectives  ·  05 Mar 2020  ·  doi:10.31478/202003b
A Signal-Level Transfer Learning Framework for Autonomous Reconfiguration of Wearable Systems
Ramyar Saeedi, Assefaw H. Gebremedhin
IEEE Transactions on Mobile Computing  ·  01 Mar 2020  ·  doi:10.1109/tmc.2018.2878673
Multi-Sensor Time-Series Classification for Activity Tracking Under Variable Length
Skyler Norgaard, Ramyar Saeedi, Assefaw H. Gebremedhin
IEEE Sensors Journal  ·  01 Mar 2020  ·  doi:10.1109/jsen.2019.2953938
The effect of sour cherry consumption on blood pressure, IL-6, CRP, and TNF-α levels: A systematic review and meta-analysis of randomized controlled trials sour cherry consumption and blood pressure
Baizhi Han, Akshaya Srikanth Bhagavathula, Muhammed Rashid, Manik Chhabra, Cain Clark, Hebatullah M. Abdulazeem, Mohamed Abd-ElGawad, Hamed Kord Varkaneh, Jamal Rahmani, Yong Zhang
Journal of King Saud University - Science  ·  01 Mar 2020  ·  doi:10.1016/j.jksus.2020.01.002
Workplace knowledge flows
The Quarterly Journal of Economics  ·  01 Mar 2020  ·  insightnet:93c06df5d59020c15298
A Bayesian approach for detecting a disease that is not being modeled.
John M Aronis, Jeffrey P Ferraro, Per H Gesteland, Fuchiang Tsui, Ye Ye, Michael M Wagner, Gregory F Cooper
PloS one  ·  28 Feb 2020  ·  doi:10.1371/journal.pone.0229658
Assessing the Potential Impact of a Long-Acting SkinDisinfectant in the Prevention of Methicillin-Resistant Staphylococcus aureus Transmission.
Short CT, Mietchen MS, Lofgren ET
International journal of environmental research and public health  ·  26 Feb 2020  ·  doi:10.3390/ijerph17051500
Diffusion/Contagion Processes on Social Networks.
Valente TW, Vega Yon GG
Health education & behavior : the official publication of the Society for Public Health Education  ·  24 Feb 2020  ·  doi:10.1177/1090198120901497
Efficacy and Safety of Non-Steroidal Anti-Androgens in Patients with Metastatic Prostate Cancer: Meta-Analysis of Randomized Controlled Trials.
Rashid M, Ramesh M, Shamshavali K, Dang A, Patel H, Undela K
Reviews on recent clinical trials  ·  14 Feb 2020  ·  doi:10.2174/1574887114666191105152404
Provider Practice Competition and Adoption of Medicare's Oncology Care Model.
Ali Jalali, Christopher Martin, Richard E Nelson, Megan E Vanneman, Brook I Martin, Kathleen A Cooney, Norman J Waitzman, Brock O’Neil
Medical care  ·  01 Feb 2020  ·  doi:10.1097/mlr.0000000000001243
ergmito: Exponential Random Graph Models for Small Networks
George Vega Yon
CRAN: Contributed Packages  ·  01 Feb 2020  ·  doi:10.32614/cran.package.ergmito
Validation of the SHEA/IDSA severity criteria to predict poor outcomes among inpatients and outpatients with Clostridioides difficile infection.
Stevens VW, Shoemaker HE, Jones MM, Jones BE, Nelson RE, Khader K, Samore MH, Rubin MA
Infection control and hospital epidemiology  ·  30 Jan 2020  ·  doi:10.1017/ice.2020.8
Inpatient Management of Uncomplicated Skin and Soft Tissue Infections in 34 Veterans Affairs Medical Centers: A Medication Use Evaluation.
Sutton JD, Carico R, Burk M, Jones MM, Wei X, …, Goetz MB, Echevarria KL, Spivak ES, Cunningham FE, Skin and Soft Tissue Infection Medication Use Evaluation Group
Open forum infectious diseases  ·  27 Jan 2020  ·  doi:10.1093/ofid/ofz554
Incidence and Outcomes Associated With Clostridium difficile Infections: A Systematic Review and Meta-analysis.
Alexandre R Marra, Eli N Perencevich, Richard E Nelson, Matthew Samore, Karim Khader, …, Melissa A Ward, Jennifer S McDanel, Rajeshwari Nair, Erin Balkenende, Marin L Schweizer
JAMA network open  ·  03 Jan 2020  ·  doi:10.1001/jamanetworkopen.2019.17597
Levetiracetam and cutaneous adverse reactions: A systematic review of descriptive studies.
Rashid M, Rajan AK, Chhabra M, Kashyap A
Seizure  ·  03 Jan 2020  ·  doi:10.1016/j.seizure.2020.01.002
Reply to Verweij et al.
Timothy M Uyeki, Michael G Ison, Cameron R Wolfe, Andrew T Pavia
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  02 Jan 2020  ·  doi:10.1093/cid/ciz568
Antibiotic resistance: Is youtube a quality communicator?
International Journal of Scientific and Technology Research  ·  01 Jan 2020  ·  insightnet:95d0e81ef73efcc1aac5
Compartment and hub definitions tune metabolic networks for metabolomic interpretations.
Waller TC, Berg JA, Lex A, Chapman BE, Rutter J
GigaScience  ·  01 Jan 2020  ·  doi:10.1093/gigascience/giz137
Exploring Disparities in Awarding VA Service-Connected Disability for Post-Traumatic Stress Disorder for Active Duty Military Service Members from Recent Conflicts in Iraq and Afghanistan.
Redd AM, Gundlapalli AV, Suo Y, Pettey WBP, Brignone E, …, Poltavskiy EA, Janak JC, Howard JT, Sosnov JA, Stewart IJ
Military medicine  ·  01 Jan 2020  ·  doi:10.1093/milmed/usz208
Extraction of Sequence from Bangla Handwritten Numerals and Recognition Using LSTM
Shadmaan Hye, Md. Rahat-uz-Zaman, M. A. H. Akhand
2020 IEEE Region 10 Symposium (TENSYMP)  ·  01 Jan 2020  ·  doi:10.1109/tensymp50017.2020.9230921
Linezolid Induced Skin Reactions in a Multi Drug Resistant Infective Endocarditis Patient: A Rare Case.
Rajan AK, Kashyap A, Chhabra M, Rashid M
Current drug safety  ·  01 Jan 2020  ·  doi:10.2174/1574886315666200516175053
Predicting and Planning for Musculoskeletal Service-Connected Disabilities in VA Using Disability for Active Duty OEF/OIF Military Service Members.
Gundlapalli AV, Redd AM, Suo Y, Pettey WBP, Brignone E, …, Poltavskiy EA, Janak JC, Howard JT, Sosnov JA, Stewart IJ
Military medicine  ·  01 Jan 2020  ·  doi:10.1093/milmed/usz223
Prevalence and Predictors of Self-Medication Practices in India: A Systematic Literature Review and Meta-Analysis.
Rashid M, Chhabra M, Kashyap A, Undela K, Gudi SK
Current clinical pharmacology  ·  01 Jan 2020  ·  doi:10.2174/1574884714666191122103953

2019

slurmR: A Lightweight Wrapper for 'Slurm'
George Vega Yon
CRAN: Contributed Packages  ·  30 Dec 2019  ·  doi:10.32614/cran.package.slurmr
Audio Future Block Prediction with Conditional Generative Adversarial Network
Md. Rahat-uz-Zaman, Shadmaan Hye, Mahmudul Hasan
2019 3rd International Conference on Electrical, Computer & Telecommunication Engineering (ICECTE)  ·  26 Dec 2019  ·  doi:10.1109/icecte48615.2019.9303563
Sex and the Diagnostic Pathway to Bladder Cancer among Veterans: No Evidence of Disparity.
Kristine E Lynch, Benjamin Viernes, Karim Khader, Scott L DuVall, Florian R Schroeck
Women's health issues : official publication of the Jacobs Institute of Women's Health  ·  24 Dec 2019  ·  doi:10.1016/j.whi.2019.11.001
Modelling multilocus selection in an individual-based, spatially-explicit landscape genetics framework.
Landguth EL, Forester BR, Eckert AJ, Shirk AJ, Menon M, Whipple A, Day CC, Cushman SA
Molecular ecology resources  ·  19 Dec 2019  ·  doi:10.1111/1755-0998.13121
Multidrug-resistant gram-negative organisms and association with 1-year mortality, readmission, and length of stay in Veterans with spinal cord injuries and disorders.
Ramanathan S, Fitzpatrick MA, Suda KJ, Burns SP, Jones MM, LaVela SL, Evans CT
Spinal cord  ·  11 Dec 2019  ·  doi:10.1038/s41393-019-0393-y
Reinforcement of an infection control bundle targeting prevention practices for Clostridioides difficile in Veterans Health Administration nursing homes.
Jeanmarie Mayer, Nimalie D Stone, Molly Leecaster, Nan Hu, Warren Pettey, …, David Johnson, Christopher Woods, Edward Young, L Clifford McDonald, Dale Gerding
American journal of infection control  ·  05 Dec 2019  ·  doi:10.1016/j.ajic.2019.09.019
A Multi-Modal Human Machine Interface for Controlling a Smart Wheelchair
Saifuddin Mahmud, Xiangxu Lin, Jong-Hoon Kim, Hasib Iqbal, MD Rahat-Uz-Zaman, Sakib Reza, M Asifur Rahman
2019 IEEE 7th Conference on Systems, Process and Control (ICSPC)  ·  01 Dec 2019  ·  doi:10.1109/icspc47137.2019.9068027
Agglomerative Clustering of Handwritten Numerals to Determine Similarity of Different Languages
Md. Rahat-uz-Zaman, Shadmaan Hye
2019 22nd International Conference on Computer and Information Technology (ICCIT)  ·  01 Dec 2019  ·  doi:10.1109/iccit48885.2019.9038550
Assessment of the impact of pharmacist-led face-to-face counselling on HIV/AIDS among school & college going students, and infected patients in south India
Sai Krishna Gudi, Manik Chhabra, Muhammed Rashid
Clinical Epidemiology and Global Health  ·  01 Dec 2019  ·  doi:10.1016/j.cegh.2019.01.006
Satisfaction towards the services provided by the community pharmacist in north-west India: A qualitative exploratory study
Manik Chhabra, Sai Krishna Gudi, Muhammed Rashid, Aditya Goyal, Raman Kumar Tripathi, Ananth Kashyap
Clinical Epidemiology and Global Health  ·  01 Dec 2019  ·  doi:10.1016/j.cegh.2019.02.001
Identifying predictors of antimicrobial exposure in hospitalized patients using a machine learning approach.
Chowdhury AS, Lofgren ET, Moehring RW, Broschat SL
Journal of applied microbiology  ·  12 Nov 2019  ·  doi:10.1111/jam.14499
Genotype-8: A modern family member of hepatitis C virus
Sai Krishna Gudi, Manik Chhabra, Muhammed Rashid
Indian Journal of Pharmaceutical Education and Research  ·  11 Nov 2019  ·  doi:10.5530/ijper.53.4s.146
Isolated Increased Intracranial Pressure and Unilateral Papilledema in an Infant With Traumatic Brain Injury and Nondepressed Basilar Skull Fracture.
Jennifer Dunnick, Per Gesteland
Pediatric emergency care  ·  01 Nov 2019  ·  doi:10.1097/pec.0000000000001968
Potential Impact of Hospital-acquired Pneumonia Guidelines on Empiric Antibiotics. An Evaluation of 113 Veterans Affairs Medical Centers.
Bostwick AD, Jones BE, Paine R, Goetz MB, Samore M, Jones M
Annals of the American Thoracic Society  ·  01 Nov 2019  ·  doi:10.1513/annalsats.201902-162oc
Environmental Contamination with Candida Species in Multiple Hospitals Including a Tertiary Care Hospital with a Candida auris Outbreak.
Jessica Kumar, Brandon Eilertson, Jennifer L Cadnum, Chauna S Whitlow, Annette L Jencson, …, Sarah L Krein, Windy D Tanner, JeanMarie Mayer, Matthew H Samore, Curtis J Donskey
Pathogens & immunity  ·  28 Oct 2019  ·  doi:10.20411/pai.v4i2.291
An introduction to algorithmic differentiation
Assefaw H. Gebremedhin, Andrea Walther
WIREs Data Mining and Knowledge Discovery  ·  24 Oct 2019  ·  doi:10.1002/widm.1334
Preventing leisure from being overlooked: Intersecting leisure and prevention sciences
Elizabeth H. Weybright, Linda L. Caldwell, Raven H. Weaver
Journal of Leisure Research  ·  20 Oct 2019  ·  doi:10.1080/00222216.2019.1617646
A qualitative study of factors affecting personal protective equipment use among health care personnel.
Molly Harrod, Lauren E Weston, Lynn Gregory, Laura Petersen, Jeanmarie Mayer, Frank A Drews, Sarah L Krein
American journal of infection control  ·  11 Oct 2019  ·  doi:10.1016/j.ajic.2019.08.031
slurmR: A lightweight wrapper for HPC with Slurm.
Vega Yon GG, Marjoram P
Journal of open source software  ·  08 Oct 2019  ·  doi:10.21105/joss.01493
Diagnosis and Antibiotic Management of Otitis Media and Otitis Externa in United States Veterans.
Pontefract B, Nevers M, Fleming-Dutra KE, Hersh A, Samore M, Madaras-Kelly K
Open forum infectious diseases  ·  04 Oct 2019  ·  doi:10.1093/ofid/ofz432
Effect of Frequency of Changing Point-of-Use Reminder Signs on Health Care Worker Hand Hygiene Adherence: A Cluster Randomized Clinical Trial.
Mark W Vander Weg, Eli N Perencevich, Amy M J O’Shea, Michael P Jones, Mary S Vaughan Sarrazin, …, Daniel J Morgan, Michael A Rubin, Joseph Thurn, Marvin J Bittner, Heather Schacht Reisinger
JAMA network open  ·  02 Oct 2019  ·  doi:10.1001/jamanetworkopen.2019.13823
Lek-associated movement of a putative Ebolavirus reservoir, the hammer-headed fruit bat (Hypsignathus monstrosus), in northern Republic of Congo.
Olson SH, Bounga G, Ondzie A, Bushmaker T, Seifert SN, Kuisma E, Taylor DW, Munster VJ, Walzer C
PloS one  ·  01 Oct 2019  ·  doi:10.1371/journal.pone.0223139
Origraph: Interactive Network Wrangling
Alex Bigelow, Carolina Nobre, Miriah Meyer, Alexander Lex
2019 IEEE Conference on Visual Analytics Science and Technology (VAST)  ·  01 Oct 2019  ·  doi:10.1109/vast47406.2019.8986909
Ten simple rules to create biological network figures for communication.
Marai GE, Pinaud B, Bühler K, Lex A, Morris JH
PLoS computational biology  ·  26 Sep 2019  ·  doi:10.1371/journal.pcbi.1007244
The design and evaluation of a Bayesian system for detecting and characterizing outbreaks of influenza.
Nicholas E Millett, John M Aronis, Michael M Wagner, Fuchiang Tsui, Ye Ye, Jeffrey P Ferraro, Peter J Haug, Per H Gesteland, Gregory F Cooper
Online journal of public health informatics  ·  19 Sep 2019  ·  doi:10.5210/ojphi.v11i2.9952
Evaluation of a Redesigned Personal Protective Equipment Gown.
Frank A Drews, Diane Mulvey, Kristina Stratford, Matthew H Samore, Jeanmarie Mayer
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  13 Sep 2019  ·  doi:10.1093/cid/ciz520
Model-based Assessment of the Effect of Contact Precautions Applied to Surveillance-detected Carriers of Carbapenemase-producing Enterobacteriaceae in Long-term Acute Care Hospitals.
Damon J A Toth, Karim Khader, Alexander Beams, Matthew H Samore
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  13 Sep 2019  ·  doi:10.1093/cid/ciz557
Understanding Workflow and Personal Protective Equipment Challenges Across Different Healthcare Personnel Roles.
Molly Harrod, Laura Petersen, Lauren E Weston, Lynn Gregory, Jeanmarie Mayer, Matthew H Samore, Frank A Drews, Sarah L Krein
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  13 Sep 2019  ·  doi:10.1093/cid/ciz527
Prescribing pattern of antihypertensive medication and adherence to Joint National Commission-8 guidelines in a rural tertiary care Indian teaching hospital.
Venkataraman R, Rashid M, Shashikantha B, Soumya A, Vijayan G, Manuel GG, Islam S
Journal of basic and clinical physiology and pharmacology  ·  10 Sep 2019  ·  doi:10.1515/jbcpp-2019-0133
Changing trends in IVIG use in pediatric patients: A retrospective review of practices in a network of major USA pediatric hospitals.
Alfred Balch, Jacob Wilkes, Emily Thorell, Andrew Pavia, Catherine M T Sherwin, Elena Y Enioutina
International immunopharmacology  ·  02 Sep 2019  ·  doi:10.1016/j.intimp.2019.105868
Smoking Diffusion through Networks of Diverse, Urban American Adolescents over the High School Period.
de la Haye K, Shin H, Vega Yon GG, Valente TW
Journal of health and social behavior  ·  01 Sep 2019  ·  doi:10.1177/0022146519870521
parallel: A command for parallel computing
George G. Vega Yon, Brian Quistorff
Stata Journal  ·  01 Sep 2019  ·  doi:10.1177/1536867x19874242
Long-term wildlife mortality surveillance in northern Congo: a model for the detection of Ebola virus disease epizootics.
Kuisma E, Olson SH, Cameron KN, Reed PE, Karesh WB, …, Becker-Ziaja B, Escudero-Pérez B, Goma-Nkoua C, Munster VJ, Mombouli JV
Philosophical transactions of the Royal Society of London. Series B, Biological sciences  ·  12 Aug 2019  ·  doi:10.1098/rstb.2018.0339
Analysis of University Fitness Center Data Uncovers Interesting Patterns, Enables Prediction
Yunshu Du, Assefaw H. Gebremedhin, Matthew E. Taylor
IEEE Transactions on Knowledge and Data Engineering  ·  01 Aug 2019  ·  doi:10.1109/tkde.2018.2863705
One hundred years after the 1918 pandemic: new concepts for preparing for influenza pandemics.
Andrew Pavia
Current opinion in infectious diseases  ·  01 Aug 2019  ·  doi:10.1097/qco.0000000000000564
fmcmc: A friendly MCMC framework.
Vega Yon GG, Marjoram P
Journal of open source software  ·  09 Jul 2019  ·  doi:10.21105/joss.01427
Cost analysis of various branded versus generic chemotherapeutic agents used for the treatment of early breast cancer- a deep insight from India.
Kashyap A, Balaji MN, Chhabra M, Rashid M, Muragundi PM
Expert review of pharmacoeconomics & outcomes research  ·  05 Jul 2019  ·  doi:10.1080/14737167.2019.1637735
Assessment of Knowledge on Risk Factors, Warning Signs, and Early Treatment Approaches of Stroke among Community Adults in North India: A Telephone Interview Survey.
Chhabra M, Gudi SK, Rashid M, Rohit 4, Sharma P, Sharma S, Khan H
Journal of neurosciences in rural practice  ·  01 Jul 2019  ·  doi:10.1055/s-0039-1697561
Effectiveness of a multisite personal protective equipment (PPE)-free zone intervention in acute care.
Lindsay D Visnovsky, Yue Zhang, Molly K Leecaster, Nasia Safdar, Lauren Barko, …, Catherine Shaughnessy, Kristina M Stratford, Frank A Drews, Matthew H Samore, Jeanmarie Mayer
Infection control and hospital epidemiology  ·  01 Jul 2019  ·  doi:10.1017/ice.2019.111
Perfect counterfactuals for epidemic simulations.
Kaminsky J, Keegan LT, Metcalf CJE, Lessler J
Philosophical transactions of the Royal Society of London. Series B, Biological sciences  ·  01 Jul 2019  ·  doi:10.1098/rstb.2018.0279
Prevalence, Risk Factors, and Outcomes of Bacteremic Pneumonia in Children.
Cristin Q Fritz, Kathryn M Edwards, Wesley H Self, Carlos G Grijalva, Yuwei Zhu, …, Richard G Wunderink, Evan J Anderson, Anna M Bramley, Seema Jain, Derek J Williams
Pediatrics  ·  01 Jul 2019  ·  doi:10.1542/peds.2018-3090
Parenting Practice, Leisure Experience, and Substance Use Among South African Adolescents.
Xie H, Weybright EH, Caldwell LL, Wegner L, Smith EA
Journal of leisure research  ·  21 Jun 2019  ·  doi:10.1080/00222216.2019.1620144
Risk-Based Prenatal Hepatitis C Testing Practices and Results, Alaska 2013-2016.
Nolen LD, Gustin C, Seeman S, Murphy N, Truitt S, Schillie S, Bruce MG, Bruden D, Tiesinga J, McMahon B
Canadian journal of gastroenterology & hepatology  ·  02 Jun 2019  ·  doi:10.1155/2019/8654741
Combining Natural Language Processing of Electronic Medical Notes With Administrative Data to Determine Racial/Ethnic Differences in the Disclosure and Documentation of Military Sexual Trauma in Veterans.
Adi V Gundlapalli, Audrey L Jones, Andrew Redd, Guy Divita, Emily Brignone, Warren B P Pettey, Marjorie E Carter, Matthew H Samore, Rebecca K Blais, Jamison D Fargo
Medical care  ·  01 Jun 2019  ·  doi:10.1097/mlr.0000000000001031
Effects of psychotropic on the neutrophil-lymphocyte ratio in psychiatric patients
Asian Journal of Pharmaceutical and Clinical Research  ·  01 Jun 2019  ·  insightnet:ae5921ebba0628912a18
The State of the Art in Visualizing Multivariate Networks
C. Nobre, M. Meyer, M. Streit, A. Lex
Computer Graphics Forum  ·  01 Jun 2019  ·  doi:10.1111/cgf.13728
Variation and trends in transmission dynamics of Methicillin-resistant Staphylococcus aureus in veterans affairs hospitals and nursing homes.
Khader K, Thomas A, Jones M, Toth D, Stevens V, Samore MH, CDC Modeling Infectious Diseases in Healthcare Program (MInD-Healthcare)
Epidemics  ·  29 May 2019  ·  doi:10.1016/j.epidem.2019.100347
“To have healthy leisure is to have balance”: Young adults’ conceptualization of healthy and unhealthy leisure
Elizabeth H. Weybright, Julie S. Son, Linda L. Caldwell
Journal of Leisure Research  ·  27 May 2019  ·  doi:10.1080/00222216.2019.1588694
Distance Matters: Geographic barriers to long acting reversible and permanent contraception for homeless women Veterans.
Gawron LM, Pettey WBP, Redd AM, Suo Y, Turok DK, Gundlapalli AV
Journal of social distress and the homeless  ·  22 May 2019  ·  doi:10.1080/10530789.2019.1619242
Impact of pharmacist-led home medicines review services on drug-related problems among the elderly population: a systematic review.
Gudi SK, Kashyap A, Chhabra M, Rashid M, Tiwari KK
Epidemiology and health  ·  17 May 2019  ·  doi:10.4178/epih.e2019020
Natural Language Processing Accurately Identifies Dysphagia Indications for Esophagogastroduodenoscopy Procedures in a Large US Integrated Healthcare System: Implications for Classifying Overuse and Quality Measurement.
Tyler R McVay, Cole Garrett G, Peters Celena B, Bielefeldt Klaus, John C Fang, Wendy W Chapman, Matt H Samore, Andrew J Gawron
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science  ·  06 May 2019  ·  pmid:31259022
Sensing eating mimicry among family members.
Bell BM, Spruijt-Metz D, Vega Yon GG, Mondol AS, Alam R, Ma M, Emi I, Lach J, Stankovic JA, De la Haye K
Translational behavioral medicine  ·  01 May 2019  ·  doi:10.1093/tbm/ibz051
Visualization of Big Spatial Data using Coresets for Kernel Density Estimates.
Zheng Y, Ou Y, Lex A, Phillips JM
IEEE transactions on big data  ·  29 Apr 2019  ·  doi:10.1109/tbdata.2019.2913655
Frequent and unexpected deviations from personal protective equipment guidelines increase contamination risks.
Diane Mulvey, Jeanmarie Mayer, Lindsay Visnovsky, Matthew Samore, Frank Drews
American journal of infection control  ·  24 Apr 2019  ·  doi:10.1016/j.ajic.2019.03.013
Interruptions and Delivery of Care in the Intensive Care Unit.
Frank A Drews, Boaz A Markewitz, Gregory J Stoddard, Matthew H Samore
Human factors  ·  04 Apr 2019  ·  doi:10.1177/0018720819838090
Economic Burden of Home Antimicrobial Therapy: OPAT Versus Oral Therapy.
Nathan M Krah, Tyler Bardsley, Richard Nelson, Lawanda Esquibel, Mark Crosby, Carrie L Byington, Andrew T Pavia, Adam L Hersh
Hospital pediatrics  ·  01 Apr 2019  ·  doi:10.1542/hpeds.2018-0193
Evaluation of uncomplicated acute respiratory tract infection management in veterans: A national utilization review.
Bohan JG, Madaras-Kelly K, Pontefract B, Jones M, Neuhauser MM, Bidwell Goetz M, Burk M, Cunningham F, ARI Management Improvement Group
Infection control and hospital epidemiology  ·  01 Apr 2019  ·  doi:10.1017/ice.2019.16
Human Factors Engineering Contributions to Infection Prevention and Control.
Frank A Drews, Lindsay C Visnovsky, Jeanmarie Mayer
Human factors  ·  18 Mar 2019  ·  doi:10.1177/0018720819833214
Vital Signs: Trends in Staphylococcus aureus Infections in Veterans Affairs Medical Centers - United States, 2005-2017.
Jones M, Jernigan JA, Evans ME, Roselle GA, Hatfield KM, Samore MH
MMWR. Morbidity and mortality weekly report  ·  08 Mar 2019  ·  doi:10.15585/mmwr.mm6809e2
Clinical Practice Guidelines by the Infectious Diseases Society of America: 2018 Update on Diagnosis, Treatment, Chemoprophylaxis, and Institutional Outbreak Management of Seasonal Influenzaa.
Timothy M Uyeki, Henry H Bernstein, John S Bradley, Janet A Englund, Thomas M File, …, Allison McGeer, Laura E Riley, Cameron R Wolfe, Paul E Alexander, Andrew T Pavia
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  05 Mar 2019  ·  doi:10.1093/cid/ciy874
Laboratory practices for identification and reporting of carbapenem-resistant Enterobacteriaceae in Department of Veterans Affairs facilities
Fitzpatrick MA, Suda KJ, Ramanathan S, Guihan M, Brown C, …, Icardi M, Perencevich E, Rubin M, Evans CT, QUERI CARRIAGE Program
INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY  ·  04 Mar 2019  ·  doi:10.1017/ice.2019.24
Composer-Visual Cohort Analysis of Patient Outcomes.
Rogers J, Spina N, Neese A, Hess R, Brodke D, Lex A
Applied clinical informatics  ·  01 Mar 2019  ·  doi:10.1055/s-0039-1687862
The optimal distribution of population across cities
David Albouy, Kristian Behrens, Frédéric Robert-Nicoud, Nathan Seegert
Journal of Urban Economics  ·  01 Mar 2019  ·  doi:10.1016/j.jue.2018.08.004
Valproic acid and Stevens-Johnson syndrome: a systematic review of descriptive studies.
Rashid M, Kashyap A, Undela K
International journal of dermatology  ·  27 Feb 2019  ·  doi:10.1111/ijd.14411
Shedding of methicillin-resistant Staphylococcus aureus by colonized patients during procedures and patient care activities.
Heba Alhmidi, Jennifer L Cadnum, Sreelatha Koganti, Annette L Jencson, Joseph D Rutter, Robert A Bonomo, Brigid M Wilson, JeanMarie Mayer, Matthew H Samore, Curtis J Donskey
Infection control and hospital epidemiology  ·  19 Feb 2019  ·  doi:10.1017/ice.2018.342
ED Door-to-Antibiotic Time and Long-term Mortality in Sepsis.
Ithan D Peltan, Samuel M Brown, Joseph R Bledsoe, Jeffrey Sorensen, Matthew H Samore, Todd L Allen, Catherine L Hough
Chest  ·  16 Feb 2019  ·  doi:10.1016/j.chest.2019.02.008
How Clean Is the Linen at My Hospital? The Mucorales on Unclean Linen Discovery Study of Large United States Transplant and Cancer Centers.
Alexander J Sundermann, Cornelius J Clancy, A William Pasculle, Guojun Liu, Richard B Cumbie, …, Merin Varghese, Jose Vazquez, Estella Whimbey, John R Wingard, M Hong Nguyen
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  15 Feb 2019  ·  doi:10.1093/cid/ciy669
Methicillin-resistant Staphylococcus aureus Colonization and Pre- and Post-hospital Discharge Infection Risk.
Nelson RE, Evans ME, Simbartl L, Jones M, Samore MH, Kralovic SM, Roselle GA, Rubin MA
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Feb 2019  ·  doi:10.1093/cid/ciy507
Risk factors for upper and lower functional gastrointestinal disorders in Persian Gulf War Veterans during and post-deployment.
Ashok K Tuteja, Nicholas J Talley, Gregory J Stoddard, Matthew H Samore, G Nicholas Verne
Neurogastroenterology and motility  ·  29 Jan 2019  ·  doi:10.1111/nmo.13533
Network influences on policy implementation: Evidence from a global health treaty.
Valente TW, Pitts S, Wipfli H, Vega Yon GG
Social science & medicine (1982)  ·  09 Jan 2019  ·  doi:10.1016/j.socscimed.2019.01.008
Efficacy and Safety of Nilutamide in Patients with Metastatic Prostate Cancer who Underwent Orchiectomy: A Systematic Review and Metaanalysis.
Rashid M, Shamshavali K, Chhabra M
Current clinical pharmacology  ·  01 Jan 2019  ·  doi:10.2174/1574884714666190112151202
Mycoplasma pneumoniae Among Children Hospitalized With Community-acquired Pneumonia.
Preeta K Kutty, Seema Jain, Thomas H Taylor, Anna M Bramley, Maureen H Diaz, …, Jonathan A McCullers, Andrew T Pavia, Jonas M Winchell, Stephanie J Schrag, Lauri A Hicks
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Jan 2019  ·  doi:10.1093/cid/ciy419
Propagate and Pair: A Single-Pass Approach to Critical Point Pairing in Reeb Graphs
Junyi Tu, Mustafa Hajij, Paul Rosen
Lecture Notes in Computer Science  ·  01 Jan 2019  ·  doi:10.1007/978-3-030-33720-9_8
Regional Variations in Documentation of Sexual Trauma Concepts in Electronic Medical Records in the United States Veterans Health Administration
AMIA ... Annual Symposium proceedings. AMIA Symposium  ·  01 Jan 2019  ·  insightnet:c727ed868a6114d73a43
Topologically-Guided Color Image Enhancement
Junyi Tu, Paul Rosen
Lecture Notes in Computer Science  ·  01 Jan 2019  ·  doi:10.1007/978-3-030-33723-0_22

2018

Forming a successful public health collaborative: A qualitative study.
Jeanmarie Mayer, Stacey Slager, Peter Taber, Lindsay Visnovsky, Charlene Weir
American journal of infection control  ·  21 Dec 2018  ·  doi:10.1016/j.ajic.2018.10.015
Emergency Department Crowding Is Associated With Delayed Antibiotics for Sepsis.
Ithan D Peltan, Joseph R Bledsoe, Thomas A Oniki, Jeffrey Sorensen, Al R Jephson, Todd L Allen, Matthew H Samore, Catherine L Hough, Samuel M Brown
Annals of emergency medicine  ·  22 Nov 2018  ·  doi:10.1016/j.annemergmed.2018.10.007
Testing a novel audit and feedback method for hand hygiene compliance: A multicenter quality improvement study.
Aaron M Scherer, Heather Schacht Reisinger, Michihiko Goto, Cassie Cunningham Goedken, Gosia S Clore, Alexandre R Marra, Emily E Chasco, Charlesnika T Evans, Michael A Rubin, Eli N Perencevich
Infection control and hospital epidemiology  ·  15 Nov 2018  ·  doi:10.1017/ice.2018.277
Long-Range Polymerase Chain Reaction Method for Sequencing the Ebola Virus Genome From Ecological and Clinical Samples.
Seifert SN, Schulz JE, Matson MJ, Bushmaker T, Marzi A, Munster VJ
The Journal of infectious diseases  ·  01 Nov 2018  ·  doi:10.1093/infdis/jiy290
Prevalence of Staphylococcus aureus and Use of Antistaphylococcal Therapy in Children Hospitalized with Pneumonia.
Jennifer M Frush, Yuwei Zhu, Kathryn M Edwards, Carlos G Grijalva, Isaac P Thomsen, …, Krow Ampofo, Andrew T Pavia, Sandra R Arnold, Jonathan A McCullers, Derek J Williams
Journal of hospital medicine  ·  30 Oct 2018  ·  doi:10.12788/jhm.3093
Attributable Cost and Length of Stay Associated with Nosocomial Gram-Negative Bacterial Cultures.
Nelson RE, Stevens VW, Jones M, Khader K, Schweizer ML, Perencevich EN, Rubin MA, Samore MH
Antimicrobial agents and chemotherapy  ·  24 Oct 2018  ·  doi:10.1128/aac.00462-18
Diagnostic Accuracy of Noncontrast MR Angiography Protocols at 3T for the Detection and Characterization of Lower Extremity Peripheral Arterial Disease.
Hanrahan CJ, Lindley MD, Mueller M, Kim D, Sommers D, Morrell G, Redd A, Carlston K, Lee VS
Journal of vascular and interventional radiology : JVIR  ·  11 Oct 2018  ·  doi:10.1016/j.jvir.2018.06.015
Shortened IV Antibiotic Course for Uncomplicated, Late-Onset Group B Streptococcal Bacteremia.
Eric R Coon, Raj Srivastava, Greg Stoddard, Jacob Wilkes, Andrew T Pavia, Samir S Shah
Pediatrics  ·  11 Oct 2018  ·  doi:10.1542/peds.2018-0345
Effect of varying federal definitions on prevalence and characteristics associated with carbapenem-resistant Enterobacteriaceae in veterans with spinal cord injury.
Fitzpatrick MA, Suda KJ, Jones MM, Burns SP, Poggensee L, Ramanathan S, Evans M, Evans CT
American journal of infection control  ·  06 Oct 2018  ·  doi:10.1016/j.ajic.2018.08.001
Handling Anomalies in Object Slicing for 3-D Printing
William Oropallo, Les Piegl, Paul Rosen, Khairan Rajab
Computer-Aided Design and Applications  ·  29 Sep 2018  ·  doi:10.14733/cadaps.2019.528-538
Inferring Quality in Point Cloud-based 3D Printed Objects using Topological Data Analysis
Paul Rosen, Mustafa Hajij, Junyi Tu, Tanvirul Arafin, Les Piegl
Computer-Aided Design and Applications  ·  29 Sep 2018  ·  doi:10.14733/cadaps.2019.519-527
Reply to Mercuro et al.
Sarah Kabbani, Adam L Hersh, Daniel J Shapiro, Katherine E Fleming-Dutra, Andrew T Pavia, Lauri A Hicks
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  28 Sep 2018  ·  doi:10.1093/cid/ciy275
Teens as Teachers: Positive Outcomes and Recommendations for Promoting Healthy Nutrition in Adolescents
Elizabeth H. Weybright, AnaMaria Diaz Martinez, Gary Varrella, Mary Katherine Deen, Kevin Wright
Journal of Youth Development  ·  18 Sep 2018  ·  doi:10.5195/jyd.2018.595
Short-Term Elevation of Fine Particulate Matter Air Pollution and Acute Lower Respiratory Infection.
Benjamin D Horne, Elizabeth A Joy, Michelle G Hofmann, Per H Gesteland, John B Cannon, …, E Kent Korgenski, Natalie Torosyan, Grant I Hansen, David Kartchner, C Arden Pope
American journal of respiratory and critical care medicine  ·  15 Sep 2018  ·  doi:10.1164/rccm.201709-1883oc
Juniper: A Tree+ Table Approach to Multivariate Graph Visualization.
Nobre C, Streit M, Lex A
IEEE transactions on visualization and computer graphics  ·  03 Sep 2018  ·  doi:10.1109/tvcg.2018.2865149
Chronic Multisymptom Illness Among Iraq/Afghanistan-Deployed US Veterans and Their Healthcare Utilization Within the Veterans Health Administration.
April F Mohanty, Lisa M McAndrew, Drew Helmer, Matthew H Samore, Adi V Gundlapalli
Journal of general internal medicine  ·  01 Sep 2018  ·  doi:10.1007/s11606-018-4479-6
Specifying an implementation framework for Veterans Affairs antimicrobial stewardship programmes: using a factor analysis approach.
Chou AF, Graber CJ, Zhang Y, Jones M, Goetz MB, Madaras-Kelly K, Samore M, Glassman PA
The Journal of antimicrobial chemotherapy  ·  01 Sep 2018  ·  doi:10.1093/jac/dky207
Outbreaks in a Rapidly Changing Central Africa - Lessons from Ebola.
Munster VJ, Bausch DG, de Wit E, Fischer R, Kobinger G, …, Seifert SN, Sprecher A, Ntoumi F, Massaquoi M, Mombouli JV
The New England journal of medicine  ·  22 Aug 2018  ·  doi:10.1056/nejmp1807691
Adaptive Evolution of MERS-CoV to Species Variation in DPP4.
Letko M, Miazgowicz K, McMinn R, Seifert SN, Sola I, Enjuanes L, Carmody A, van Doremalen N, Munster V
Cell reports  ·  01 Aug 2018  ·  doi:10.1016/j.celrep.2018.07.045
Identification and Characterization of Failures in Infectious Agent Transmission Precaution Practices in Hospitals: A Qualitative Study.
Sarah L Krein, Jeanmarie Mayer, Molly Harrod, Lauren E Weston, Lynn Gregory, Laura Petersen, Matthew H Samore, Frank A Drews
JAMA internal medicine  ·  01 Aug 2018  ·  doi:10.1001/jamainternmed.2018.1898
Impact of Implementing Antibiotic Stewardship Programs in 15 Small Hospitals: A Cluster-Randomized Intervention.
Edward Stenehjem, Adam L Hersh, Whitney R Buckel, Peter Jones, Xiaoming Sheng, …, John P Burke, Bert K Lopansri, Rajendu Srivastava, Tom Greene, Andrew T Pavia
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Aug 2018  ·  doi:10.1093/cid/ciy155
Is Parotitis One More Complication of Influenza? The Ongoing Challenge of Determining Causal Associations.
Andrew T Pavia
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Aug 2018  ·  doi:10.1093/cid/ciy140
Transmission of rhinovirus in the Utah BIG-LoVE families: Consequences of age and household structure.
Frederick R Adler, Chris Stockmann, Krow Ampofo, Andrew T Pavia, Carrie L Byington
PloS one  ·  25 Jul 2018  ·  doi:10.1371/journal.pone.0199388
Contact Precautions to Prevent Pathogen Transmission-Reply.
Michael A Rubin, Matthew H Samore, Anthony D Harris
JAMA  ·  24 Jul 2018  ·  doi:10.1001/jama.2018.6986
Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology.
Meyers L, Ginocchio CC, Faucett AN, Nolte FS, Gesteland PH, …, Scarpino SV, Althouse BM, Ririe KM, Malin BA, Poritz MA
JMIR public health and surveillance  ·  06 Jul 2018  ·  doi:10.2196/publichealth.9876
A hybrid solution to parallel calculation of augmented join trees of scalar fields in any dimension
Paul Rosen, Junyi Tu, Les A. Piegl
Computer-Aided Design and Applications  ·  04 Jul 2018  ·  doi:10.1080/16864360.2017.1419648
In Data We Trust? Comparison of Electronic Versus Manual Abstraction of Antimicrobial Prescribing Quality Metrics for Hospitalized Veterans With Pneumonia.
Jones BE, Haroldsen C, Madaras-Kelly K, Goetz MB, Ying J, …, Leecaster M, Greene T, Fridkin SK, Neuhauser MM, Samore MH
Medical care  ·  01 Jul 2018  ·  doi:10.1097/mlr.0000000000000916
Etiology and Impact of Coinfections in Children Hospitalized With Community-Acquired Pneumonia.
Vikki G Nolan, Sandra R Arnold, Anna M Bramley, Krow Ampofo, Derek J Williams, …, Richard G Wunderink, Kathryn M Edwards, Andrew T Pavia, Seema Jain, Jonathan A McCullers
The Journal of infectious diseases  ·  20 Jun 2018  ·  doi:10.1093/infdis/jix641
Opportunities to Improve Fluoroquinolone Prescribing in the United States for Adult Ambulatory Care Visits.
Sarah Kabbani, Adam L Hersh, Daniel J Shapiro, Katherine E Fleming-Dutra, Andrew T Pavia, Lauri A Hicks
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  18 Jun 2018  ·  doi:10.1093/cid/ciy035
Epidemiology of nontuberculous mycobacterial infections in the U.S. Veterans Health Administration.
Jones MM, Winthrop KL, Nelson SD, Duvall SL, Patterson OV, Nechodom KE, Findley KE, Radonovich LJ Jr, Samore MH, Fennelly KP
PloS one  ·  13 Jun 2018  ·  doi:10.1371/journal.pone.0197976
State-level adoption of national guidelines for norovirus outbreaks in health care settings.
Carl J Grafe, Catherine J Staes, Kensaku Kawamoto, Matthew H Samore, R Scott Evans
American journal of infection control  ·  30 May 2018  ·  doi:10.1016/j.ajic.2018.03.023
Transmission of Clostridium difficile from asymptomatically colonized or infected long-term care facility residents.
Curtis J Donskey, Venkata C K Sunkesula, Nimalie D Stone, Carolyn V Gould, L Clifford McDonald, …, Annette L Jencson, Susan P Sambol, Laurica A Petrella, Christopher A Gulvik, Dale N Gerding
Infection control and hospital epidemiology  ·  30 May 2018  ·  doi:10.1017/ice.2018.106
Impact of Antimicrobial Stewardship for Pediatric Outpatient Parenteral Antibiotic Therapy.
Adam L Hersh, Jared Olson, Chris Stockmann, Emily A Thorell, Elizabeth D Knackstedt, Lawanda Esquibel, Susan Sanderson, Andrew T Pavia
Journal of the Pediatric Infectious Diseases Society  ·  15 May 2018  ·  doi:10.1093/jpids/pix038
Outpatient Parenteral Antimicrobial Therapy in Young Infants.
Nathan M Krah, Jared Olson, Emily A Thorell, Lawanda Esquibel, Russell J Osguthorpe, Andrew T Pavia, Adam L Hersh
Journal of the Pediatric Infectious Diseases Society  ·  15 May 2018  ·  doi:10.1093/jpids/piy002
Efficacy and Safety of Enzalutamide in Metastatic Prostate Cancer Patients: A Systematic Review and Meta-Analysis
M Rashid, K Shamshavali, M Vsn, RK Hyderboini, R Thode, S Namare, V Belekar, M Chakrawarthy, A Dang
Value in Health  ·  01 May 2018  ·  doi:10.1016/j.jval.2018.04.092
A systematic review of the epidemiology of carbapenem-resistant Enterobacteriaceae in the United States.
Daniel J Livorsi, Margaret L Chorazy, Marin L Schweizer, Erin C Balkenende, Amy E Blevins, Rajeshwari Nair, Matthew H Samore, Richard E Nelson, Karim Khader, Eli N Perencevich
Antimicrobial resistance and infection control  ·  24 Apr 2018  ·  doi:10.1186/s13756-018-0346-9
Use of Multiple Imputation to Estimate the Proportion of Respiratory Virus Detections Among Patients Hospitalized With Community-Acquired Pneumonia.
Catherine H Bozio, W Dana Flanders, Lyn Finelli, Anna M Bramley, Carrie Reed, …, Jonathan A McCullers, Kathryn M Edwards, Andrew T Pavia, Richard G Wunderink, Seema Jain
Open forum infectious diseases  ·  16 Mar 2018  ·  doi:10.1093/ofid/ofy061
Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs.
Nobre C, Gehlenborg N, Coon H, Lex A
IEEE transactions on visualization and computer graphics  ·  06 Mar 2018  ·  doi:10.1109/tvcg.2018.2811488
The Importance of Contact Precautions for Endemic Methicillin-Resistant Staphylococcus aureus and Vancomycin-Resistant Enterococci.
Michael A Rubin, Matthew H Samore, Anthony D Harris
JAMA  ·  06 Mar 2018  ·  doi:10.1001/jama.2017.21122
Do non-inferiority trials of reduced intensity therapies show reduced effects? A descriptive analysis.
Scott K Aberegg, Andrew M Hersh, Matthew H Samore
BMJ open  ·  02 Mar 2018  ·  doi:10.1136/bmjopen-2017-019494
Extended models for nosocomial infection: parameter estimation and model selection.
Thomas A, Khader K, Redd A, Leecaster M, Zhang Y, Jones M, Greene T, Samore M
Mathematical medicine and biology : a journal of the IMA  ·  01 Mar 2018  ·  doi:10.1093/imammb/dqx010
Prospective forecasts of annual dengue hemorrhagic fever incidence in Thailand, 2010-2014.
Lauer SA, Sakrejda K, Ray EL, Keegan LT, Bi Q, …, Suthachana S, Laosiritaworn Y, Cummings DAT, Lessler J, Reich NG
Proceedings of the National Academy of Sciences of the United States of America  ·  20 Feb 2018  ·  doi:10.1073/pnas.1714457115
Procalcitonin Accurately Identifies Hospitalized Children With Low Risk of Bacterial Community-Acquired Pneumonia.
Chris Stockmann, Krow Ampofo, Jarrett Killpack, Derek J Williams, Kathryn M Edwards, …, Wesley H Self, Anna Bramley, Seema Jain, Andrew T Pavia, Anne J Blaschke
Journal of the Pediatric Infectious Diseases Society  ·  19 Feb 2018  ·  doi:10.1093/jpids/piw091
Establishing a Research Agenda for Preventing Transmission of Multidrug-Resistant Organisms in Acute-Care Settings in the Veterans Health Administration.
Eli N Perencevich, Anthony D Harris, Christopher D Pfeiffer, Michael A Rubin, Jennifer N Hill, …, J Stacey Klutts, Judy A Streit, Richard E Nelson, Karim Khader, Heather Schacht Reisinger
Infection control and hospital epidemiology  ·  01 Feb 2018  ·  doi:10.1017/ice.2017.309
Research Agenda for Antimicrobial Stewardship in the Veterans Health Administration
Suda KJ, Livorsi DJ, Goto M, Forrest GN, Jones MM, …, Ince D, Carrel M, Nair R, Knobloch MJ, Goetz MB
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY  ·  01 Feb 2018  ·  doi:10.1017/ice.2017.299
A Quasi-Steady-State Approximation to the Basic Target-Cell-Limited Viral Dynamics Model with a Non-Cytopathic Effect.
Cangelosi RA, Schwartz EJ, Wollkind DJ
Frontiers in microbiology  ·  30 Jan 2018  ·  doi:10.3389/fmicb.2018.00054
Gingival Overgrowth on Chronic use of Amlodipine: A Case Report
Muhammed Rashid Parambil Peedikkal, Juny Sebastian, Madhan Ramesh, Narayanappa Doddaiah, Sathya Narayana Prashanth
Indian Journal of Pharmacy Practice  ·  30 Jan 2018  ·  doi:10.5530/ijopp.10.4.61
Protocol to disseminate a hospital-site controlled intervention using audit and feedback to implement guidelines concerning inappropriate treatment of asymptomatic bacteriuria
Trautner BW, Prasad P, Grigoryan L, Hysong SJ, Kramer JR, …, Jones M, Sales A, Krein S, Naik AD, Less is More Study Group
IMPLEMENTATION SCIENCE  ·  19 Jan 2018  ·  doi:10.1186/s13012-018-0709-x
Ataxia, Manifestation of Phenytoin Toxicity: A Case Report
Singh Juhi, Tyagi Shubham Singh, Jangra Manjeet Singh, Rashid Muhammed, Chhabra Manik, Tripathi Raman Kumar
Journal of Young Pharmacist  ·  17 Jan 2018  ·  doi:10.5530/jyp.2019.11.24
Rhinovirus in Febrile Infants and Risk of Bacterial Infection.
Anne J Blaschke, E Kent Korgenski, Jacob Wilkes, Angela P Presson, Emily A Thorell, …, Elizabeth D Knackstedt, Carolyn Reynolds, Jeff E Schunk, Judy A Daly, Carrie L Byington
Pediatrics  ·  17 Jan 2018  ·  doi:10.1542/peds.2017-2384
Automating Quality Measures for Heart Failure Using Natural Language Processing: A Descriptive Study in the Department of Veterans Affairs.
Garvin JH, Kim Y, Gobbel GT, Matheny ME, Redd A, …, Kelly N, Reeves R, Kalsy M, Goldstein MK, Meystre SM
JMIR medical informatics  ·  15 Jan 2018  ·  doi:10.2196/medinform.9150
Point cloud slicing for 3-D printing
William Oropallo, Les A. Piegl, Paul Rosen, Khairan Rajab
Computer-Aided Design and Applications  ·  02 Jan 2018  ·  doi:10.1080/16864360.2017.1353732
An assessment of an adapted version of the arthritis impact measurement scales short-form questionnaire to determine health-related quality of life in Vietnamese patients with arthritis
Trung Quang Vo, Khanh Ngoc Cong Duong, Oanh Thi Ngoc Vu, An Thanh Pham, Nam Xuan Vo
Journal of Clinical and Diagnostic Research  ·  01 Jan 2018  ·  doi:10.7860/jcdr/2018/36954.11709
Impact of chronic kidney disease on health-related quality of life: A prospective observational study using the KDQ o L-36 instrument
Trung Quang Vo, Thai Quang Tran, Khanh Ngoc Cong Duong, Khang Chi Pham
Journal of Clinical and Diagnostic Research  ·  01 Jan 2018  ·  doi:10.7860/jcdr/2018/36694.11708

2017

Identifying patient- and family-centered outcomes relevant to inpatient versus at-home management of neutropenia in children with acute myeloid leukemia.
Julia E Szymczak, Kelly D Getz, Rachel Madding, Brian Fisher, Elizabeth Raetz, …, Amir Mian, Staci D Arnold, Catherine Aftandilian, Anderson B Collier, Richard Aplenc
Pediatric blood & cancer  ·  29 Dec 2017  ·  doi:10.1002/pbc.26927
Geographic Variability in Diagnosis and Antibiotic Prescribing for Acute Respiratory Tract Infections.
Adam L Hersh, Daniel J Shapiro, Andrew T Pavia, Katherine E Fleming-Dutra, Lauri A Hicks
Infectious diseases and therapy  ·  22 Dec 2017  ·  doi:10.1007/s40121-017-0181-y
Exploring Alcohol Use Motivations in Underage College Students
Brittany Rhoades Cooper, Elizabeth H. Weybright, Matthew F. Bumpus, Laura G. Hill, Jon Agley
Emerging Adulthood  ·  04 Dec 2017  ·  doi:10.1177/2167696817741030
Effectiveness of β-Lactam Monotherapy vs Macrolide Combination Therapy for Children Hospitalized With Pneumonia.
Derek J Williams, Kathryn M Edwards, Wesley H Self, Yuwei Zhu, Sandra R Arnold, …, Evan J Anderson, Lauri A Hicks, Anna M Bramley, Seema Jain, Carlos G Grijalva
JAMA pediatrics  ·  01 Dec 2017  ·  doi:10.1001/jamapediatrics.2017.3225
Quantifying Zika: Advancing the Epidemiology of Zika With Quantitative Models.
Keegan LT, Lessler J, Johansson MA
The Journal of infectious diseases  ·  01 Dec 2017  ·  doi:10.1093/infdis/jix437
Rhinovirus Viremia in Patients Hospitalized With Community-Acquired Pneumonia.
Xiaoyan Lu, Eileen Schneider, Seema Jain, Anna M Bramley, Weston Hymas, …, Richard G Wunderink, Jonathan A McCullers, Kathryn M Edwards, Andrew T Pavia, Dean D Erdman
The Journal of infectious diseases  ·  27 Nov 2017  ·  doi:10.1093/infdis/jix455
Prevalence and Factors Associated With Multidrug-Resistant Gram-Negative Organisms in Patients With Spinal Cord Injury
Evans CT, Fitzpatrick MA, Jones MM, Burns SP, Poggensee L, Ramanathan S, LaVela SL, Safdar N, Suda KJ
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY  ·  21 Nov 2017  ·  doi:10.1017/ice.2017.238
Ten challenges in CAD cyber education
Zachariah J. Beasley, Les A. Piegl, Paul Rosen
Computer-Aided Design and Applications  ·  16 Nov 2017  ·  doi:10.1080/16864360.2017.1397893
Antimicrobial Nonsusceptibility of Gram-Negative Bloodstream Isolates, Veterans Health Administration System, United States, 2003-2013 1 .
Goto M, McDanel JS, Jones MM, Livorsi DJ, Ohl ME, Beck BF, Richardson KK, Alexander B, Perencevich EN
Emerging infectious diseases  ·  01 Nov 2017  ·  doi:10.3201/eid2311.161214
Dynamics of lentiviral infection in vivo in the absence of adaptive immune responses.
Schwartz EJ, Vaidya NK, Dorman KS, Carpenter S, Mealey RH
Virology  ·  19 Oct 2017  ·  doi:10.1016/j.virol.2017.09.023
Automating Quality Measures for Heart Failure Using Natural Language Processing: A Descriptive Study in the Department of Veterans Affairs (Preprint)
Jennifer Hornung Garvin, Youngjun Kim, Glenn Temple Gobbel, Michael E Matheny, Andrew Redd, …, Natalie Kelly, Ruth Reeves, Megha Kalsy, Mary Kane Goldstein, Stephane M Meystre
Preprint  ·  09 Oct 2017  ·  doi:10.2196/preprints.9150
Authors' Response to "Veterans and the National Tragedy of Suicide".
Emily Brignone, Jamison D Fargo, Rebecca K Blais, Marjorie E Carter, Matthew H Samore, Adi V Gundlapalli
American journal of preventive medicine  ·  01 Oct 2017  ·  doi:10.1016/j.amepre.2017.04.004
The Drivers of Acute and Long-term Care Clostridium difficile Infection Rates: A Retrospective Multilevel Cohort Study of 251 Facilities.
Brown KA, Daneman N, Jones M, Nechodom K, Stevens V, Adler FR, Goetz MB, Mayer J, Samore M
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Oct 2017  ·  doi:10.1093/cid/cix532
Dynamic transmission models for economic analysis applied to health care-associated infections: A review of the literature.
Richard E Nelson, Rishi Deka, Karim Khader, Vanessa W Stevens, Marin L Schweizer, Michael A Rubin
American journal of infection control  ·  25 Sep 2017  ·  doi:10.1016/j.ajic.2017.02.035
Using data indexing for remote visualization of point cloud data
Paul Rosen, Les A. Piegl
Computer-Aided Design and Applications  ·  19 Sep 2017  ·  doi:10.1080/16864360.2017.1287754
Human Bocavirus Capsid Messenger RNA Detection in Children With Pneumonia.
Robert Schlaberg, Krow Ampofo, Keith D Tardif, Chris Stockmann, Keith E Simmon, …, Kathryn Edwards, Sandra R Arnold, Anna Bramley, Seema Jain, Andrew T Pavia
The Journal of infectious diseases  ·  15 Sep 2017  ·  doi:10.1093/infdis/jix352
Identifying Gaps in Respiratory Syncytial Virus Disease Epidemiology in the United States Prior to the Introduction of Vaccines.
Lindsay Kim, Brian Rha, Jon S Abramson, Larry J Anderson, Carrie L Byington, …, Rosalyn Singleton, H Keipp Talbot, Edward E Walsh, Jane R Zucker, Susan I Gerber
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  15 Sep 2017  ·  doi:10.1093/cid/cix432
Interactive visual exploration and refinement of cluster assignments.
Kern M, Lex A, Gehlenborg N, Johnson CR
BMC bioinformatics  ·  12 Sep 2017  ·  doi:10.1186/s12859-017-1813-7
Empirical Consequences of Current Recommendations for the Design and Interpretation of Noninferiority Trials.
Scott K Aberegg, Andrew M Hersh, Matthew H Samore
Journal of general internal medicine  ·  05 Sep 2017  ·  doi:10.1007/s11606-017-4161-4
Detection of 23 Gastrointestinal Pathogens Among Children Who Present With Diarrhea.
Chris Stockmann, Andrew T Pavia, Brad Graham, Mike Vaughn, Rob Crisp, …, Stephanie Thatcher, E Kent Korgenski, Trenda Barney, Judy Daly, Margarita Rogatcheva
Journal of the Pediatric Infectious Diseases Society  ·  01 Sep 2017  ·  doi:10.1093/jpids/piw020
Increased Health Care Utilization and Costs Among Veterans With a Positive Screen for Military Sexual Trauma.
Emily Brignone, Adi V Gundlapalli, Rebecca K Blais, Rachel Kimerling, Tyson S Barrett, Richard E Nelson, Marjorie E Carter, Matthew H Samore, Jamison D Fargo
Medical care  ·  01 Sep 2017  ·  doi:10.1097/mlr.0000000000000767
Long-acting Reversible Contraception Among Homeless Women Veterans With Chronic Health Conditions: A Retrospective Cohort Study.
Gawron LM, Redd A, Suo Y, Pettey W, Turok DK, Gundlapalli AV
Medical care  ·  01 Sep 2017  ·  doi:10.1097/mlr.0000000000000765
Management of Bacteriuria in Veterans Affairs Hospitals.
Spivak ES, Burk M, Zhang R, Jones MM, Neuhauser MM, Goetz MB, Cunningham FE, Management of Urinary Tract Infections Medication Use Evaluation Group, Management of Urinary Tract Infections Medication Use Evaluation Group
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Sep 2017  ·  doi:10.1093/cid/cix474
Patient-aligned Care Team Engagement to Connect Veterans Experiencing Homelessness With Appropriate Health Care.
Gundlapalli AV, Redd A, Bolton D, Vanneman ME, Carter ME, Johnson E, Samore MH, Fargo JD, O’Toole TP
Medical care  ·  01 Sep 2017  ·  doi:10.1097/mlr.0000000000000770
UpSetR: an R package for the visualization of intersecting sets and their properties.
Conway JR, Lex A, Gehlenborg N
Bioinformatics (Oxford, England)  ·  01 Sep 2017  ·  doi:10.1093/bioinformatics/btx364
The Potential for Interventions in a Long-term Acute Care Hospital to Reduce Transmission of Carbapenem-Resistant Enterobacteriaceae in Affiliated Healthcare Facilities.
Damon J A Toth, Karim Khader, Rachel B Slayton, Alexander J Kallen, Adi V Gundlapalli, Justin J O’Hagan, Anthony E Fiore, Michael A Rubin, John A Jernigan, Matthew H Samore
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  15 Aug 2017  ·  doi:10.1093/cid/cix370
A Bayesian system to detect and characterize overlapping outbreaks.
John M Aronis, Nicholas E Millett, Michael M Wagner, Fuchiang Tsui, Ye Ye, Jeffrey P Ferraro, Peter J Haug, Per H Gesteland, Gregory F Cooper
Journal of biomedical informatics  ·  07 Aug 2017  ·  doi:10.1016/j.jbi.2017.08.003
Estimating the impact post randomization changes in staff behavior in infection prevention trials: a mathematical modeling approach.
Lofgren ET
BMC infectious diseases  ·  03 Aug 2017  ·  doi:10.1186/s12879-017-2632-1
Incidence of Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia coli and Klebsiella Infections in the United States: A Systematic Literature Review.
Jennifer McDanel, Marin Schweizer, Victoria Crabb, Richard Nelson, Matthew Samore, …, Amy E Blevins, Daniel Diekema, Hsiu-Yin Chiang, Rajeshwari Nair, Eli Perencevich
Infection control and hospital epidemiology  ·  30 Jul 2017  ·  doi:10.1017/ice.2017.156
Comparative Effectiveness of Cefazolin Versus Nafcillin or Oxacillin for Treatment of Methicillin-Susceptible Staphylococcus aureus Infections Complicated by Bacteremia: A Nationwide Cohort Study
McDanel JS, Roghmann MC, Perencevich EN, Ohl ME, Goto M, …, Jones M, Albertson JP, Nair R, O’Shea AMJ, Schweizer ML
CLINICAL INFECTIOUS DISEASES  ·  01 Jul 2017  ·  doi:10.1093/cid/cix287
swga: a primer design toolkit for selective whole genome amplification.
Clarke EL, Sundararaman SA, Seifert SN, Bushman FD, Hahn BH, Brisson D
Bioinformatics (Oxford, England)  ·  01 Jul 2017  ·  doi:10.1093/bioinformatics/btx118
Variation in Empiric Coverage Versus Detection of Methicillin-Resistant Staphylococcus aureus and Pseudomonas aeruginosa in Hospitalizations for Community-Onset Pneumonia Across 128 US Veterans Affairs Medical Centers
Barbara E Jones, Kevin Antoine Brown, Makoto M Jones, Benedikt D Huttner, Tom Greene, Brian C Sauer, Karl Madaras-Kelly, Michael A Rubin, Matthew Bidwell Goetz, Matthew H Samore
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY  ·  21 Jun 2017  ·  doi:10.1017/ice.2017.98
Relationship Between Body Mass Index and Outcomes Among Hospitalized Patients With Community-Acquired Pneumonia.
Anna M Bramley, Carrie Reed, Lyn Finelli, Wesley H Self, Krow Ampofo, …, Andrew T Pavia, Kathryn M Edwards, Richard G Wunderink, Seema Jain, Centers for Disease Control and Prevention Etiology of Pneumonia in the Community (EPIC) Study Team
The Journal of infectious diseases  ·  15 Jun 2017  ·  doi:10.1093/infdis/jix241
Expected hazards and hospital beds in host cities of the 2014 FIFA World Cup in Brazil.
Elaine Silva Miranda, Kimberley Shoaf, Raulino Sabino da Silva, Carolina Figueiredo Freitas, Claudia Garcia Serpa Osorio-de-Castro
Cadernos de saude publica  ·  12 Jun 2017  ·  doi:10.1590/0102-311x00010616
Modeling the mind: How do we design effective decision-support?
Charlene R Weir, Michael A Rubin, Jonathan Nebeker, Matthew Samore
Journal of biomedical informatics  ·  08 Jun 2017  ·  doi:10.1016/j.jbi.2017.06.008
Attributable Mortality of Healthcare-Associated Infections Due to Multidrug-Resistant Gram-Negative Bacteria and Methicillin-Resistant Staphylococcus Aureus.
Nelson RE, Slayton RB, Stevens VW, Jones MM, Khader K, Rubin MA, Jernigan JA, Samore MH
Infection control and hospital epidemiology  ·  01 Jun 2017  ·  doi:10.1017/ice.2017.83
Graffinity: Visualizing Connectivity in Large Graphs.
Kerzner E, Lex A, Sigulinsky CL, Umess T, Jones BW, Marc RE, Meyer M
Computer graphics forum : journal of the European Association for Computer Graphics  ·  01 Jun 2017  ·  doi:10.1111/cgf.13184
Association of Inpatient Antimicrobial Utilization Measures with Antimicrobial Stewardship Activities and Facility Characteristics of Veterans Affairs Medical Centers.
Graber CJ, Jones MM, Chou AF, Zhang Y, Goetz MB, Madaras-Kelly K, Samore MH, Glassman PA
Journal of hospital medicine  ·  01 May 2017  ·  doi:10.12788/jhm.2730
Predicting secondary school dropout among South African adolescents: A survival analysis approach.
Weybright EH, Caldwell LL, Xie HJ, Wegner L, Smith EA
South African journal of education  ·  01 May 2017  ·  doi:10.15700/saje.v37n2a1353
Reducing Pediatric Sternal Wound Infections: A Quality Improvement Project.
Claudia Delgado-Corcoran, Charlotte S Van Dorn, Charles Pribble, Emily A Thorell, Andrew T Pavia, Camille Ward, Randall Smout, Susan L Bratton, Phillip T Burch
Pediatric critical care medicine : a journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies  ·  01 May 2017  ·  doi:10.1097/pcc.0000000000001135
Viral Pathogen Detection by Metagenomics and Pan-Viral Group Polymerase Chain Reaction in Children With Pneumonia Lacking Identifiable Etiology.
Robert Schlaberg, Krista Queen, Keith Simmon, Keith Tardif, Chris Stockmann, …, Mark Yandell, Seema Jain, Andrew T Pavia, Suxiang Tong, Krow Ampofo
The Journal of infectious diseases  ·  01 May 2017  ·  doi:10.1093/infdis/jix148
Reducing diagnostic uncertainty to improve treatment of respiratory infections.
Andrew T Pavia
The Lancet. Respiratory medicine  ·  06 Apr 2017  ·  doi:10.1016/s2213-2600(17)30126-1
A study of the transferability of influenza case detection systems between two large healthcare systems.
Ye Ye, Michael M Wagner, Gregory F Cooper, Jeffrey P Ferraro, Howard Su, …, Arturo López Pineda, Lingyun Shi, Rudy Van Bree, Thomas Ginter, Fuchiang Tsui
PloS one  ·  05 Apr 2017  ·  doi:10.1371/journal.pone.0174970
Comparative Effectiveness of Vancomycin and Metronidazole for the Prevention of Recurrence and Death in Patients With Clostridium difficile Infection
Vanessa W Stevens, Richard E Nelson, Elyse M Schwab-Daugherty, Karim Khader, Makoto M Jones, …, Melinda Neuhauser, Peter Glassman, Matthew Bidwell Goetz, Matthew H Samore, Michael A Rubin
JAMA INTERNAL MEDICINE  ·  01 Apr 2017  ·  doi:10.1001/jamainternmed.2016.9045
Congestive heart failure information extraction framework for automated treatment performance measures assessment.
Meystre SM, Kim Y, Gobbel GT, Matheny ME, Redd A, Bray BE, Garvin JH
Journal of the American Medical Informatics Association : JAMIA  ·  01 Apr 2017  ·  doi:10.1093/jamia/ocw097
Reply to Buetti et al.
Edward Stenehjem, Adam L Hersh, Andrew T Pavia
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  01 Apr 2017  ·  doi:10.1093/cid/cix041
Homelessness following disability-related discharges from active duty military service in Afghanistan and Iraq.
Fargo JD, Brignone E, Metraux S, Peterson R, Carter ME, Barrett T, Palmer M, Redd A, Samore MH, Gundlapalli AV
Disability and health journal  ·  10 Mar 2017  ·  doi:10.1016/j.dhjo.2017.03.003
Limited and Variable Use of Antivirals for Children Hospitalized With Influenza.
Chris Stockmann, Carrie L Byington, Andrew T Pavia, Krow Ampofo, Jacob Wilkes, E Kent Korgenski, Adam L Hersh
JAMA pediatrics  ·  01 Mar 2017  ·  doi:10.1001/jamapediatrics.2016.3484
Utah obstetricians' opinions of planned home birth and conflicting NICE/ACOG guidelines: A qualitative study.
Emily Rainey, Sara Simonsen, Joseph Stanford, Kimberley Shoaf, Jami Baayd
Birth (Berkeley, Calif.)  ·  17 Feb 2017  ·  doi:10.1111/birt.12276
Changes in bacterial epidemiology and antibiotic resistance among veterans with spinal cord injury/disorder over the past 9 years.
Fitzpatrick MA, Suda KJ, Safdar N, Burns SP, Jones MM, Poggensee L, Ramanathan S, Evans CT
The journal of spinal cord medicine  ·  15 Feb 2017  ·  doi:10.1080/10790268.2017.1281373
A dynamic transmission model to evaluate the effectiveness of infection control strategies
Karim Khader, Alun Thomas, W Charles Huskins, Molly Leecaster, Yue Zhang, Tom Greene, Andrew Redd, Matthew H Samore
Open Forum Infectious Diseases  ·  10 Feb 2017  ·  doi:10.1093/oid/ofw247
Influence of Antibiotics on the Detection of Bacteria by Culture-Based and Culture-Independent Diagnostic Tests in Patients Hospitalized With Community-Acquired Pneumonia.
Aaron M Harris, Anna M Bramley, Seema Jain, Sandra R Arnold, Krow Ampofo, …, Andrew T Pavia, Richard G Wunderink, Kathryn M Edwards, Jonas M Winchell, Lauri A Hicks
Open forum infectious diseases  ·  10 Feb 2017  ·  doi:10.1093/ofid/ofx014
Extraction of left ventricular ejection fraction information from various types of clinical reports.
Kim Y, Garvin JH, Goldstein MK, Hwang TS, Redd A, Bolton D, Heidenreich PA, Meystre SM
Journal of biomedical informatics  ·  02 Feb 2017  ·  doi:10.1016/j.jbi.2017.01.017
DSPCP: A Data Scalable Approach for Identifying Relationships in Parallel Coordinates.
Nguyen H, Rosen P
IEEE transactions on visualization and computer graphics  ·  30 Jan 2017  ·  doi:10.1109/tvcg.2017.2661309
A Report of the Efforts of the Veterans Health Administration National Antimicrobial Stewardship Initiative.
Kelly AA, Jones MM, Echevarria KL, Kralovic SM, Samore MH, …, Madaras-Kelly KJ, Simbartl LA, Morreale AP, Neuhauser MM, Roselle GA
Infection control and hospital epidemiology  ·  25 Jan 2017  ·  doi:10.1017/ice.2016.328
Characteristics of the highest users of emergency services in veterans affairs hospitals: Homeless and non-homeless
Gundlapalli Adi V., Jones Audrey L., Redd Andrew, Suo Ying, Pettey Warren B.P., …, Brignone Emily, Gawron Lori, Vanneman Megan, Samore Matthew H., Fargo Jamison D.
Studies in Health Technology and Informatics  ·  01 Jan 2017  ·  doi:10.3233/978-1-61499-781-8-24
Comparison of grouping methods for template extraction from VA Medical Record Text
Redd Andrew M., Gundlapalli Adi V., Divita Guy, Tran Le-Thuy, Pettey Warren B.P., Samore Matthew H.
Studies in Health Technology and Informatics  ·  01 Jan 2017  ·  doi:10.3233/978-1-61499-781-8-136
Distance to veterans administration medical centers as a barrier to specialty care for homeless women veterans
Gawron Lori M., Pettey Warren B.P., Redd Andrew M., Suo Ying, Gundlapalli Adi V.
Studies in Health Technology and Informatics  ·  01 Jan 2017  ·  doi:10.3233/978-1-61499-781-8-112
General Symptom Extraction from VA Electronic Medical Notes.
Guy Divita, Gang Luo, Le-Thuy T Tran, T Elizabeth Workman, Adi V Gundlapalli, Matthew H Samore
Studies in health technology and informatics  ·  01 Jan 2017  ·  pmid:29295115
How Sensemaking Tools Influence Display Space Usage
EuroVis Workshop on Visual Analytics (EuroVA)  ·  01 Jan 2017  ·  doi:10.2312/eurova.20171112
The "Safety Net" of Community Care: Leveraging GIS to Identify Geographic Access Barriers to Texas Family Planning Clinics for Homeless Women Veterans
AMIA ... Annual Symposium proceedings. AMIA Symposium  ·  01 Jan 2017  ·  insightnet:afff5f5c7caa8af052f2
Using structured and unstructured data to refine estimates of military sexual trauma status among Us Military Veterans
Gundlapalli Adi V., Brignone Emily, Divita Guy, Jones Audrey L., Redd Andrew, …, Mohanty April, Gawron Lori, Blais Rebecca, Samore Matthew H., Fargo Jamison D.
Studies in Health Technology and Informatics  ·  01 Jan 2017  ·  doi:10.3233/978-1-61499-781-8-128
“It Was Like We Were All Equal”: Maximizing Youth Development Using Youth-Adult Partnerships
Elizabeth H. Weybright, Nathan Trauntvein, Mary Katherine Deen
Journal of Park and Recreation Administration  ·  01 Jan 2017  ·  doi:10.18666/jpra-2017-v35-i1-7246

2016

Serology Enhances Molecular Diagnosis of Respiratory Virus Infections Other than Influenza in Children and Adults Hospitalized with Community-Acquired Pneumonia.
Yange Zhang, Senthilkumar K Sakthivel, Anna Bramley, Seema Jain, Amber Haynes, …, Richard G Wunderink, Kathryn M Edwards, Andrew T Pavia, Jonathan A McCullers, Dean D Erdman
Journal of clinical microbiology  ·  28 Dec 2016  ·  doi:10.1128/jcm.01701-16
Oseltamivir Use Among Children and Adults Hospitalized With Community-Acquired Pneumonia.
Ikwo K Oboho, Anna Bramley, Lyn Finelli, Alicia Fry, Krow Ampofo, …, Jonathan A McCullers, Richard G Wunderink, Andrew T Pavia, Kathryn M Edwards, Seema Jain
Open forum infectious diseases  ·  27 Dec 2016  ·  doi:10.1093/ofid/ofw254
Prostate cancer risk regions at 8q24 and 17q24 are differentially associated with somatic TMPRSS2:ERG fusion status.
Manuel Luedeke, Antje E Rinckleb, Liesel M FitzGerald, Milan S Geybels, Johanna Schleutker, …, Sara Benlloch, PRACTICAL consortium, Josef Hoegel, Janet L Stanford, Christiane Maier
Human molecular genetics  ·  15 Dec 2016  ·  doi:10.1093/hmg/ddw349
A Retrospective Study of the Impact of Rapid Diagnostic Testing on Time to Pathogen Identification and Antibiotic Use for Children with Positive Blood Cultures.
Angela Fimbres Veesenmeyer, Jared A Olson, Adam L Hersh, Chris Stockmann, Kent Korgenski, Emily A Thorell, Andrew T Pavia, Anne J Blaschke
Infectious diseases and therapy  ·  10 Nov 2016  ·  doi:10.1007/s40121-016-0136-8
Incidence and Outcomes Associated With Infections Caused by Vancomycin-Resistant Enterococci in the United States: Systematic Literature Review and Meta-Analysis.
Hsiu-Yin Chiang, Eli N Perencevich, Rajeshwari Nair, Richard E Nelson, Matthew Samore, …, Margaret L Chorazy, Loreen A Herwaldt, Amy Blevins, Melissa A Ward, Marin L Schweizer
Infection control and hospital epidemiology  ·  09 Nov 2016  ·  doi:10.1017/ice.2016.254
The state of methamphetamine ('tik') use among youth in the Western Cape, South Africa.
Weybright EH, Caldwell LL, Wegner L, Smith E, Jacobs JJ
South African medical journal = Suid-Afrikaanse tydskrif vir geneeskunde  ·  02 Nov 2016  ·  doi:10.7196/samj.2016.v106i11.10814
HIV Dynamics With Immune Responses: Perspectives From Mathematical Modeling
Elissa J. Schwartz, Karin R. H. Biggs, Clayton Bailes, Kari A. Ferolito, Naveen K. Vaidya
Current Clinical Microbiology Reports  ·  24 Oct 2016  ·  doi:10.1007/s40588-016-0049-z
On the impact of model selection on predictor identification and parameter inference.
Pfeiffer RM, Redd A, Carroll RJ
Computational statistics  ·  22 Oct 2016  ·  doi:10.1007/s00180-016-0690-2
Predicting Severe Pneumonia Outcomes in Children.
Derek J Williams, Yuwei Zhu, Carlos G Grijalva, Wesley H Self, Frank E Harrell, …, Richard G Wunderink, Jonathan A McCullers, Andrew T Pavia, Seema Jain, Kathryn M Edwards
Pediatrics  ·  01 Oct 2016  ·  doi:10.1542/peds.2016-1019
Antibiotic Use in Small Community Hospitals.
Edward Stenehjem, Adam L Hersh, Xiaoming Sheng, Peter Jones, Whitney R Buckel, James F Lloyd, Stephen Howe, R Scott Evans, Tom Greene, Andrew T Pavia
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  30 Sep 2016  ·  doi:10.1093/cid/ciw588
Harnessing Intra-Host Strain Competition to Limit Antibiotic Resistance: Mathematical Model Results.
Alexander B Beams, Damon J A Toth, Karim Khader, Frederick R Adler
Bulletin of mathematical biology  ·  26 Sep 2016  ·  doi:10.1007/s11538-016-0201-1
Generating point clouds for slicing free-form objects for 3-D printing
William Oropallo, Les A. Piegl, Paul Rosen, Khairan Rajab
Computer-Aided Design and Applications  ·  24 Aug 2016  ·  doi:10.1080/16864360.2016.1223443
A pilot study of a heuristic algorithm for novel template identification from VA electronic medical record text.
Redd AM, Gundlapalli AV, Divita G, Carter ME, Tran LT, Samore MH
Journal of biomedical informatics  ·  03 Aug 2016  ·  doi:10.1016/j.jbi.2016.07.019
Moving Beyond Drinking to Have a Good Time: a Person-Centered Approach to Identifying Reason Typologies in Legal-Aged College Student Drinkers.
Weybright EH, Cooper BR, Beckmeyer J, Bumpus MF, Hill LG, Agley J
Prevention science : the official journal of the Society for Prevention Research  ·  01 Aug 2016  ·  doi:10.1007/s11121-016-0658-z
Preparedness for the Rio 2016 Olympic Games: hospital treatment capacity in georeferenced areas.
Carolina Figueiredo Freitas, Claudia Garcia Serpa Osorio-de-Castro, Kimberley Irene Shoaf, Raulino Sabino da Silva, Elaine Silva Miranda
Cadernos de saude publica  ·  01 Aug 2016  ·  doi:10.1590/0102-311x00087116
Perceived Parental Control, Restructuring Ability, and Leisure Motivation: A Cross-Cultural Comparison.
Xie HJ, Caldwell LL, Graham JW, Weybright EH, Wegner L, Smith EA
Leisure sciences  ·  19 Jul 2016  ·  doi:10.1080/01490400.2016.1194790
Costs and Mortality Associated With Multidrug-Resistant Healthcare-Associated Acinetobacter Infections.
Richard E Nelson, Marin L Schweizer, Eli N Perencevich, Scott D Nelson, Karim Khader, Hsiu-Yin Chiang, Margaret L Chorazy, Amy Blevins, Melissa A Ward, Matthew H Samore
Infection control and hospital epidemiology  ·  13 Jul 2016  ·  doi:10.1017/ice.2016.145
Detecting the presence of an indwelling urinary catheter and urinary symptoms in hospitalized patients using natural language processing.
Gundlapalli AV, Divita G, Redd A, Carter ME, Ko D, …, Strymish J, Krein S, Gupta K, Sales A, Trautner BW
Journal of biomedical informatics  ·  09 Jul 2016  ·  doi:10.1016/j.jbi.2016.07.012
Feasibility of Population Health Analytics and Data Visualization for Decision Support in the Infectious Diseases Domain: A pilot study.
Don Roosan, Guilherme Del Fiol, Jorie Butler, Yarden Livnat, Jeanmarie Mayer, Matthew Samore, Makoto Jones, Charlene Weir
Applied clinical informatics  ·  29 Jun 2016  ·  doi:10.4338/aci-2015-12-ra-0182
Clinical and Epidemiological Evidence of the Red Queen Hypothesis in Pneumococcal Serotype Dynamics.
Chris Stockmann, Krow Ampofo, Andrew T Pavia, Anne J Blaschke, Edward O Mason, Angela P Presson, Larry J Forney, Carrie L Byington
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  09 Jun 2016  ·  doi:10.1093/cid/ciw357
Pathfinder: Visual Analysis of Paths in Graphs.
Partl C, Gratzl S, Streit M, Wassermann AM, Pfister H, Schmalstieg D, Lex A
Computer graphics forum : journal of the European Association for Computer Graphics  ·  01 Jun 2016  ·  doi:10.1111/cgf.12883
Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling.
Steven Flygare, Keith Simmon, Chase Miller, Yi Qiao, Brett Kennedy, …, Krow Ampofo, Karen Eilbeck, Gabor Marth, Mark Yandell, Robert Schlaberg
Genome biology  ·  26 May 2016  ·  doi:10.1186/s13059-016-0969-1
Estimates of the risk of large or long-lasting outbreaks of Middle East respiratory syndrome after importations outside the Arabian Peninsula.
Damon J A Toth, Windy D Tanner, Karim Khader, Adi V Gundlapalli
Epidemics  ·  07 May 2016  ·  doi:10.1016/j.epidem.2016.04.002
Risk Factors for Recurrent Clostridium difficile Infection in Pediatric Inpatients.
Elyse M Schwab, Jacob Wilkes, Kent Korgenski, Adam L Hersh, Andrew T Pavia, Vanessa W Stevens
Hospital pediatrics  ·  04 May 2016  ·  doi:10.1542/hpeds.2015-0170
Influenza in Infants Born to Women Vaccinated During Pregnancy.
Julie H Shakib, Kent Korgenski, Angela P Presson, Xiaoming Sheng, Michael W Varner, Andrew T Pavia, Carrie L Byington
Pediatrics  ·  02 May 2016  ·  doi:10.1542/peds.2015-2360
Economic Analysis of Veterans Affairs Initiative to Prevent Methicillin-Resistant Staphylococcus aureus Infections.
Richard E Nelson, Vanessa W Stevens, Karim Khader, Makoto Jones, Matthew H Samore, …, R Douglas Scott, Rachel B Slayton, Marin L Schweizer, Eli L Perencevich, Michael A Rubin
American journal of preventive medicine  ·  01 May 2016  ·  doi:10.1016/j.amepre.2015.10.016
Estimates of Social Contact in a Middle School Based on Self-Report and Wireless Sensor Data.
Molly Leecaster, Damon J A Toth, Warren B P Pettey, Jeanette J Rainey, Hongjiang Gao, Amra Uzicanin, Matthew Samore
PloS one  ·  21 Apr 2016  ·  doi:10.1371/journal.pone.0153690
From Visual Exploration to Storytelling and Back Again
Gratzl S, Lex A, Gehlenborg N, Cosgrove N, Streit M
Computer Graphics Forum  ·  20 Apr 2016  ·  doi:10.1101/049585
Importation, Antibiotics, and Clostridium difficile Infection in Veteran Long-Term Care: A Multilevel Case-Control Study.
Brown KA, Jones M, Daneman N, Adler FR, Stevens V, Nechodom KE, Goetz MB, Samore MH, Mayer J
Annals of internal medicine  ·  19 Apr 2016  ·  doi:10.7326/m15-1754
Trajectories of adolescent substance use development and the influence of healthy leisure: A growth mixture modeling approach.
Weybright EH, Caldwell LL, Ram N, Smith EA, Wegner L
Journal of adolescence  ·  11 Apr 2016  ·  doi:10.1016/j.adolescence.2016.03.012
Rethinking sensitivity analysis of nuclear simulations with topology
Dan Maljovec, Bei Wang, Paul Rosen, Andrea Alfonsi, Giovanni Pastore, Cristian Rabiti, Valerio Pascucci
IEEE Pacific Visualization Symposium  ·  01 Apr 2016  ·  doi:10.1109/pacificvis.2016.7465252
Using network projections to explore co-incidence and context in large clinical datasets: Application to homelessness among U.S. Veterans.
Pettey WB, Toth DJ, Redd A, Carter ME, Samore MH, Gundlapalli AV
Journal of biomedical informatics  ·  01 Apr 2016  ·  doi:10.1016/j.jbi.2016.03.023
An Economic Analysis of Strategies to Control Clostridium Difficile Transmission and Infection Using an Agent-Based Simulation Model
Richard E Nelson, Makoto Jones, Molly Leecaster, Matthew H Samore, William Ray, …, Karim Khader, Vanessa W Stevens, Dale Gerding, Marin L Schweizer, Michael A Rubin
PLOS ONE  ·  30 Mar 2016  ·  doi:10.1371/journal.pone.0152248
Identification of Bacterial and Viral Codetections With Mycoplasma pneumoniae Using the TaqMan Array Card in Patients Hospitalized With Community-Acquired Pneumonia.
Maureen H Diaz, Kristen E Cross, Alvaro J Benitez, Lauri A Hicks, Preeta Kutty, …, Andrew T Pavia, Richard G Wunderink, Kathryn M Edwards, Seema Jain, Jonas M Winchell
Open forum infectious diseases  ·  30 Mar 2016  ·  doi:10.1093/ofid/ofw071
Community-Acquired Pneumonia Hospitalization among Children with Neurologic Disorders.
Alexander J Millman, Lyn Finelli, Anna M Bramley, Georgina Peacock, Derek J Williams, …, Jonathan A McCullers, Krow Ampofo, Andrew T Pavia, Kathryn M Edwards, Seema Jain
The Journal of pediatrics  ·  23 Mar 2016  ·  doi:10.1016/j.jpeds.2016.02.049
Therapeutic Drug Monitoring of Ganciclovir Treatment for Cytomegalovirus Infections Among Immunocompromised Children.
Chris Stockmann, Catherine M T Sherwin, Elizabeth D Knackstedt, Adam L Hersh, Andrew T Pavia, Michael G Spigarelli
Journal of the Pediatric Infectious Diseases Society  ·  08 Mar 2016  ·  doi:10.1093/jpids/piw008
Critical Point Cancellation in 3D Vector Fields: Robustness and Discussion.
Skraba P, Rosen P, Wang B, Chen G, Bhatia H, Pascucci V
IEEE transactions on visualization and computer graphics  ·  28 Feb 2016  ·  doi:10.1109/tvcg.2016.2534538
Characteristics of Antimicrobial Stewardship Programs at Veterans Affairs Hospitals: Results of a Nationwide Survey.
Chou AF, Graber CJ, Jones M, Zhang Y, Goetz MB, Madaras-Kelly K, Samore M, Kelly A, Glassman PA
Infection control and hospital epidemiology  ·  24 Feb 2016  ·  doi:10.1017/ice.2016.26
netdiffuseR: Analysis of Diffusion and Contagion Processes on Networks
George Vega Yon, Thomas Valente, Anibal Olivera Morales
CRAN: Contributed Packages  ·  18 Feb 2016  ·  doi:10.32614/cran.package.netdiffuser
Estimating finite-population reproductive numbers in heterogeneous populations.
Keegan LT, Dushoff J
Journal of theoretical biology  ·  15 Feb 2016  ·  doi:10.1016/j.jtbi.2016.01.022
Antimicrobial Stewardship Knowledge, Attitudes, and Practices among Health Care Professionals at Small Community Hospitals.
Whitney R Buckel, Adam L Hersh, Andy T Pavia, Peter S Jones, Ashli A Owen-Smith, Edward Stenehjem
Hospital pharmacy  ·  01 Feb 2016  ·  doi:10.1310/hpj5102-149
Supporting novice clinicians cognitive strategies: System design perspective.
Roosan Islam, Jeanmarie Mayer, Justin Clutter
... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics  ·  01 Feb 2016  ·  doi:10.1109/bhi.2016.7455946
Vials: Visualizing Alternative Splicing of Genes.
Strobelt H, Alsallakh B, Botros J, Peterson B, Borowsky M, Pfister H, Lex A
IEEE transactions on visualization and computer graphics  ·  30 Jan 2016  ·  doi:10.1109/tvcg.2015.2467911
Editorial Commentary: The Modern Quest for the "Holy Grail" of Pneumonia Etiology.
Seema Jain, Andrew T Pavia
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  07 Jan 2016  ·  doi:10.1093/cid/civ1219
Influenza Vaccine Effectiveness: Mysteries, Enigmas, and a Few Clues.
Andrew T Pavia
The Journal of infectious diseases  ·  06 Jan 2016  ·  doi:10.1093/infdis/jiv579
Big-Data Based Decision-Support Systems to Improve Clinicians' Cognition.
Roosan D, Samore M, Jones M, Livnat Y, Clutter J
Proceedings. IEEE International Conference on Healthcare Informatics  ·  01 Jan 2016  ·  doi:10.1109/ichi.2016.39
Data scalable approach for identifying correlation in large and muti-dimensional data
VISIGRAPP 2016 - Proceedings of the 11th Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications - Doctoral Consortium  ·  01 Jan 2016  ·  insightnet:c9cba6cc53e7883ef2c4
Finding 'Evidence of Absence' in Medical Notes: Using NLP for Clinical Inferencing.
Marjorie E Carter, Guy Divita, Andrew Redd, Michael A Rubin, Matthew H Samore, Kalpana Gupta, Barbara W Trautner, Adi V Gundlapalli
Studies in health technology and informatics  ·  01 Jan 2016  ·  doi:10.3233/978-1-61499-664-4-79
PlateRunner: A Search Engine to Identify EMR Boilerplates.
Divita G, Workman TE, Carter ME, Redd A, Samore MH, Gundlapalli AV
Studies in health technology and informatics  ·  01 Jan 2016  ·  doi:10.3233/978-1-61499-664-4-33
muView: A visual analysis system for exploring uncertainty in myocardial ischemia simulations
Paul Rosen, Brett Burton, Kristin Potter, Chris R. Johnson
Mathematics and Visualization  ·  01 Jan 2016  ·  doi:10.1007/978-3-319-24523-2_3

2015

Perceptions of alcohol use by friends compared to peers: Associations with middle adolescents' own use.
Beckmeyer JJ, Weybright EH
Substance abuse  ·  29 Dec 2015  ·  doi:10.1080/08897077.2015.1134754
Understanding complex clinical reasoning in infectious diseases for improving clinical decision support design.
Islam R, Weir CR, Jones M, Del Fiol G, Samore MH
BMC medical informatics and decision making  ·  30 Nov 2015  ·  doi:10.1186/s12911-015-0221-z
Cumulative Attributable Difference: An Infection Metric That Reflects a Value System.
Jones MM, Nelson RE, Rubin MA
Infection control and hospital epidemiology  ·  23 Nov 2015  ·  doi:10.1017/ice.2015.231
Scaling-up NLP Pipelines to Process Large Corpora of Clinical Notes.
Divita G, Carter M, Redd A, Zeng Q, Gupta K, Trautner B, Samore M, Gundlapalli A
Methods of information in medicine  ·  04 Nov 2015  ·  doi:10.3414/me14-02-0018
Predicting asthma control deterioration in children.
Gang Luo, Bryan L Stone, Bernhard Fassl, Christopher G Maloney, Per H Gesteland, Sashidhar R Yerram, Flory L Nkoy
BMC medical informatics and decision making  ·  14 Oct 2015  ·  doi:10.1186/s12911-015-0208-9
Cross-immunity between strains explains the dynamical pattern of paramyxoviruses.
Samit Bhattacharyya, Per H Gesteland, Kent Korgenski, Ottar N Bjørnstad, Frederick R Adler
Proceedings of the National Academy of Sciences of the United States of America  ·  12 Oct 2015  ·  doi:10.1073/pnas.1516698112
Reducing Time-dependent Bias in Estimates of the Attributable Cost of Health Care-associated Methicillin-resistant Staphylococcus aureus Infections: A Comparison of Three Estimation Strategies.
Nelson RE, Samore MH, Jones M, Greene T, Stevens VW, Liu CF, Graves N, Evans MF, Rubin MA
Medical care  ·  01 Sep 2015  ·  doi:10.1097/mlr.0000000000000403
Estimates of Outbreak Risk from New Introductions of Ebola with Immediate and Delayed Transmission Control.
Toth DJ, Gundlapalli AV, Khader K, Pettey WB, Rubin MA, Adler FR, Samore MH
Emerging infectious diseases  ·  01 Aug 2015  ·  doi:10.3201/eid2108.150170
Robustness-Based Simplification of 2D Steady and Unsteady Vector Fields.
Skraba P, Bei Wang, Guoning Chen, Rosen P
IEEE transactions on visualization and computer graphics  ·  01 Aug 2015  ·  doi:10.1109/tvcg.2015.2440250
Identifying Homelessness among Veterans Using VA Administrative Data: Opportunities to Expand Detection Criteria.
Peterson R, Gundlapalli AV, Metraux S, Carter ME, Palmer M, Redd A, Samore MH, Fargo JD
PloS one  ·  14 Jul 2015  ·  doi:10.1371/journal.pone.0132664
Recent and rapid population growth and range expansion of the Lyme disease tick vector, Ixodes scapularis, in North America.
Khatchikian CE, Prusinski MA, Stone M, Backenson PB, Wang IN, Foley E, Seifert SN, Levy MZ, Brisson D
Evolution; international journal of organic evolution  ·  06 Jul 2015  ·  doi:10.1111/evo.12690
The role of heterogeneity in contact timing and duration in network models of influenza spread in schools.
Damon J A Toth, Molly Leecaster, Warren B P Pettey, Adi V Gundlapalli, Hongjiang Gao, Jeanette J Rainey, Amra Uzicanin, Matthew H Samore
Journal of the Royal Society, Interface  ·  06 Jul 2015  ·  doi:10.1098/rsif.2015.0279
The Magnitude of Time-Dependent Bias in the Estimation of Excess Length of Stay Attributable to Healthcare-Associated Infections.
Richard E Nelson, Scott D Nelson, Karim Khader, Eli L Perencevich, Marin L Schweizer, Michael A Rubin, Nicholas Graves, Stephan Harbarth, Vanessa W Stevens, Matthew H Samore
Infection control and hospital epidemiology  ·  04 Jun 2015  ·  doi:10.1017/ice.2015.129
Excess Length of Stay Attributable to Clostridium difficile Infection (CDI) in the Acute Care Setting: A Multistate Model.
Vanessa W Stevens, Karim Khader, Richard E Nelson, Makoto Jones, Michael A Rubin, Kevin A Brown, Martin E Evans, Tom Greene, Eric Slade, Matthew H Samore
Infection control and hospital epidemiology  ·  26 May 2015  ·  doi:10.1017/ice.2015.132
Antibody escape kinetics of equine infectious anemia virus infection of horses.
Schwartz EJ, Nanda S, Mealey RH
Journal of virology  ·  15 Apr 2015  ·  doi:10.1128/jvi.00137-15
Free-virus and cell-to-cell transmission in models of equine infectious anemia virus infection.
Allen LJ, Schwartz EJ
Mathematical biosciences  ·  10 Apr 2015  ·  doi:10.1016/j.mbs.2015.04.001
Estimating epidemic parameters: Application to H1N1 pandemic data.
Schwartz EJ, Choi B, Rempala GA
Mathematical biosciences  ·  02 Apr 2015  ·  doi:10.1016/j.mbs.2015.03.007
Evolution and population genomics of the Lyme borreliosis pathogen, Borrelia burgdorferi.
Seifert SN, Khatchikian CE, Zhou W, Brisson D
Trends in genetics : TIG  ·  09 Mar 2015  ·  doi:10.1016/j.tig.2015.02.006
The impact of healthcare-associated methicillin-resistant Staphylococcus aureus infections on post-discharge healthcare costs and utilization.
Nelson RE, Jones M, Liu CF, Samore MH, Evans ME, Graves N, Lee B, Rubin MA
Infection control and hospital epidemiology  ·  26 Feb 2015  ·  doi:10.1017/ice.2015.22
Boredom Prone or Nothing to Do? Distinguishing Between State and Trait Leisure Boredom and its Association with Substance Use in South African Adolescents.
Weybright EH, Caldwell LL, Ram N, Smith EA, Wegner L
Leisure sciences  ·  01 Jan 2015  ·  doi:10.1080/01490400.2015.1014530
Evaluation of PHI Hunter in Natural Language Processing Research
Perspectives in health information management  ·  01 Jan 2015  ·  insightnet:9935ba51405a731c88b9
Guidance on the selection of central difference method accuracy in volume rendering
Kazuhiro Nagai, Paul Rosen
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)  ·  01 Jan 2015  ·  doi:10.1007/978-3-319-27857-5_30
Health care-associated methicillin-resistant Staphylococcus aureus infections increases the risk of postdischarge mortality.
Nelson RE, Stevens VW, Jones M, Samore MH, Rubin MA
American journal of infection control  ·  01 Jan 2015  ·  doi:10.1016/j.ajic.2014.09.014
Nora: A Vocabulary Discovery Tool for Concept Extraction.
Divita G, Carter ME, Durgahee BS, Pettey WE, Redd A, Samore MH, Gundlapalli AV
Studies in health technology and informatics  ·  01 Jan 2015  ·  doi:10.3233/978-1-61499-538-8-179
OceanPaths: Visualizing Multivariate Oceanography Data
Eurographics Conference on Visualization (EuroVis) - Short Papers  ·  01 Jan 2015  ·  doi:10.2312/eurovisshort.20151124
Scaling Out and Evaluation of OBSecAn, an Automated Section Annotator for Semi-Structured Clinical Documents, on a Large VA Clinical Corpus
AMIA ... Annual Symposium proceedings. AMIA Symposium  ·  01 Jan 2015  ·  insightnet:142abead462b601ff8a1
Taming Big Data: An Information Extraction Strategy for Large Clinical Text Corpora.
Gundlapalli AV, Divita G, Carter ME, Redd A, Samore MH, Gupta K, Trautner B
Studies in health technology and informatics  ·  01 Jan 2015  ·  doi:10.3233/978-1-61499-538-8-175

2014

ConTour: Data-Driven Exploration of Multi-Relational Datasets for Drug Discovery.
Partl C, Lex A, Streit M, Strobelt H, Wassermann AM, Pfister H, Schmalstieg D
IEEE transactions on visualization and computer graphics  ·  01 Dec 2014  ·  doi:10.1109/tvcg.2014.2346752
Domino: Extracting, Comparing, and Manipulating Subsets Across Multiple Tabular Datasets.
Gratzl S, Gehlenborg N, Lex A, Pfister H, Streit M
IEEE transactions on visualization and computer graphics  ·  01 Dec 2014  ·  doi:10.1109/tvcg.2014.2346260
UpSet: Visualization of Intersecting Sets.
Lex A, Gehlenborg N, Strobelt H, Vuillemot R, Pfister H
IEEE transactions on visualization and computer graphics  ·  01 Dec 2014  ·  doi:10.1109/tvcg.2014.2346248
Collateral benefit of screening patients for methicillin-resistant Staphylococcus aureus at hospital admission: isolation of patients with multidrug-resistant gram-negative bacteria.
Jones M, Nielson C, Gupta K, Khader K, Evans M
American journal of infection control  ·  07 Nov 2014  ·  doi:10.1016/j.ajic.2014.09.016
Utility and validity of estimated GFR-based surrogate time-to-event end points in CKD: a simulation study.
Greene T, Teng CC, Inker LA, Redd A, Ying J, Woodward M, Coresh J, Levey AS
American journal of kidney diseases : the official journal of the National Kidney Foundation  ·  30 Oct 2014  ·  doi:10.1053/j.ajkd.2014.08.019
Modelling the epidemic spread of an H1N1 influenza outbreak in a rural university town.
Vaidya NK, Morgan M, Jones T, Miller L, Lapin S, Schwartz EJ
Epidemiology and infection  ·  17 Oct 2014  ·  doi:10.1017/s0950268814002568
Pandemic 2009 H1N1 influenza in two settings in a small community: the workplace and the university campus.
Schwartz EJ, Morgan M, Lapin S
Epidemiology and infection  ·  13 Oct 2014  ·  doi:10.1017/s0950268814002684
Initiation and termination of antibiotic regimens in Veterans Affairs hospitals.
Huttner B, Jones M, Madaras-Kelly K, Neuhauser MM, Rubin MA, Goetz MB, Samore MH
The Journal of antimicrobial chemotherapy  ·  06 Oct 2014  ·  doi:10.1093/jac/dku388
Guided visual exploration of genomic stratifications in cancer.
Streit M, Lex A, Gratzl S, Partl C, Schmalstieg D, Pfister H, Park PJ, Gehlenborg N
Nature methods  ·  01 Sep 2014  ·  doi:10.1038/nmeth.3088
Mu-8: visualizing differences between proteins and their families.
Mercer JD, Pandian B, Lex A, Bonneel N, Pfister H
BMC proceedings  ·  28 Aug 2014  ·  doi:10.1186/1753-6561-8-s2-s5
Does universal active MRSA surveillance influence anti-MRSA antibiotic use? A retrospective analysis of the treatment of patients admitted with suspicion of infection at Veterans Affairs Medical Centers between 2005 and 2010.
Makoto Jones, Benedikt Huttner, Molly Leecaster, Angela Huttner, Kavitha Damal, …, Christopher Nielson, Michael A Rubin, Matthew Bidwell Goetz, Karl Madaras-Kelly, Matthew H Samore
The Journal of antimicrobial chemotherapy  ·  06 Aug 2014  ·  doi:10.1093/jac/dku299
Sets and intersections
Alexander Lex, Nils Gehlenborg
Nature Methods  ·  01 Aug 2014  ·  doi:10.1038/nmeth.3033
A systematic review of predictive modeling for bronchiolitis.
Gang Luo, Flory L Nkoy, Per H Gesteland, Tiffany S Glasgow, Bryan L Stone
International journal of medical informatics  ·  24 Jul 2014  ·  doi:10.1016/j.ijmedinf.2014.07.005
Hospital preparedness in advance of the 2014 FIFA World Cup in Brazil.
Kimberley Shoaf, Claudia G S Osorio de Castro, Elaine Silva Miranda
Prehospital and disaster medicine  ·  09 Jul 2014  ·  doi:10.1017/s1049023x1400065x
A flexible pinhole camera model for coherent nonuniform sampling.
Popescu V, Benes B, Rosen P, Cui J, Wang L
IEEE computer graphics and applications  ·  01 Jul 2014  ·  doi:10.1109/mcg.2014.21
Hospital-acquired Clostridium difficile infections: estimating all-cause mortality and length of stay.
Lofgren ET, Cole SR, Weber DJ, Anderson DJ, Moehring RW
Epidemiology (Cambridge, Mass.)  ·  01 Jul 2014  ·  doi:10.1097/ede.0000000000000119
Identifying the Conditions Under Which Antibodies Protect Against Infection by Equine Infectious Anemia Virus.
Schwartz EJ, Smith RJ
Vaccines  ·  27 May 2014  ·  doi:10.3390/vaccines2020397
Show Me the Invisible: Visualizing Hidden Content.
Geymayer T, Steinberger M, Lex A, Streit M, Schmalstieg D
Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference  ·  26 Apr 2014  ·  doi:10.1145/2556288.2557032
Analytic calculation of finite-population reproductive numbers for direct- and vector-transmitted diseases with homogeneous mixing.
Keegan L, Dushoff J
Bulletin of mathematical biology  ·  23 Apr 2014  ·  doi:10.1007/s11538-014-9950-x
The Dynamic Association between Healthy Leisure and Substance Use in South African Adolescents: A State and Trait Perspective.
Weybright EH, Caldwell LL, Ram N, Smith E, Jacobs J
World leisure journal  ·  01 Apr 2014  ·  doi:10.1080/16078055.2014.903726
2D vector field simplification based on robustness
Primoz Skraba, Bei Wang, Guoning Chen, Paul Rosen
IEEE Pacific Visualization Symposium  ·  01 Mar 2014  ·  doi:10.1109/pacificvis.2014.17
Characterizing cancer subtypes using dual analysis in Caleydo StratomeX.
Turkay C, Lex A, Streit M, Pfister H, Hauser H
IEEE computer graphics and applications  ·  01 Mar 2014  ·  doi:10.1109/mcg.2014.1
Incorporating model complexity and spatial sampling bias into ecological niche models of climate change risks faced by 90 California vertebrate species of concern
Dan L. Warren, Amber N. Wright, Stephanie N. Seifert, H. Bradley Shaffer
Diversity and Distributions  ·  01 Mar 2014  ·  doi:10.1111/ddi.12160
Detecting earlier indicators of homelessness in the free text of medical records.
Redd A, Carter M, Divita G, Shen S, Palmer M, Samore M, Gundlapalli AV
Studies in health technology and informatics  ·  01 Jan 2014  ·  doi:10.3233/978-1-61499-423-7-153
Exploring patterns in resource utilization prior to the formal identification of homelessness in recently returned Veterans
Gundlapalli Adi V., Redd Andrew, Carter Marjorie E., Palmer Miland, Peterson Rachel, Samore Matthew H.
Studies in Health Technology and Informatics  ·  01 Jan 2014  ·  doi:10.3233/978-1-61499-423-7-265
Extracting Concepts Related to Homelessness from the Free Text of VA Electronic Medical Records
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium  ·  01 Jan 2014  ·  insightnet:33346973202655125417
Geometric constraints on quadratic Bézier curves using minimal length and energy
Young Joon Ahn, Christoph Hoffmann, Paul Rosen
Journal of Computational and Applied Mathematics  ·  01 Jan 2014  ·  doi:10.1016/j.cam.2013.07.005
Recognizing Questions and Answers in EMR Templates Using Natural Language Processing.
Divita G, Shen S, Carter ME, Redd A, Forbush T, Palmer M, Samore MH, Gundlapalli AV
Studies in health technology and informatics  ·  01 Jan 2014  ·  doi:10.3233/978-1-61499-423-7-149
Was Bob Seger Right? Relation Between Boredom in Leisure and [Risky] Sex.
Miller JA, Caldwell LL, Weybright EH, Smith EA, Vergnani T, Wegner L
Leisure sciences  ·  01 Jan 2014  ·  doi:10.1080/01490400.2014.860789

2013

A mathematical model to evaluate the routine use of fecal microbiota transplantation to prevent incident and recurrent Clostridium difficile infection.
Lofgren ET, Moehring RW, Anderson DJ, Weber DJ, Fefferman NH
Infection control and hospital epidemiology  ·  02 Dec 2013  ·  doi:10.1086/674394
Entourage: visualizing relationships between biological pathways using contextual subsets.
Lex A, Partl C, Kalkofen D, Streit M, Gratzl S, Wassermann AM, Schmalstieg D, Pfister H
IEEE transactions on visualization and computer graphics  ·  01 Dec 2013  ·  doi:10.1109/tvcg.2013.154
Individual-based computational model used to explain 2009 pandemic H1N1 in rural campus community
LYDIA MILLER, THERESE JONES, MINDY MORGAN, SERGEY LAPIN, ELISSA J. SCHWARTZ
Journal of Biological Systems  ·  01 Dec 2013  ·  doi:10.1142/s0218339013400056
LineUp: visual analysis of multi-attribute rankings.
Gratzl S, Lex A, Gehlenborg N, Pfister H, Streit M
IEEE transactions on visualization and computer graphics  ·  01 Dec 2013  ·  doi:10.1109/tvcg.2013.173
A simulation-based assessment of strategies to control Clostridium difficile transmission and infection.
Michael A Rubin, Makoto Jones, Molly Leecaster, Karim Khader, Willy Ray, …, Damon Toth, Theodore Sablay, Robert J Borotkanics, Dale N Gerding, Matthew H Samore
PloS one  ·  21 Nov 2013  ·  doi:10.1371/journal.pone.0080671
Understanding virus-host dynamics following EIAV infection in SCID horses.
Ciupe SM, Schwartz EJ
Journal of theoretical biology  ·  16 Nov 2013  ·  doi:10.1016/j.jtbi.2013.11.003
enRoute: dynamic path extraction from biological pathway maps for exploring heterogeneous experimental datasets.
Partl C, Lex A, Streit M, Kalkofen D, Kashofer K, Schmalstieg D
BMC bioinformatics  ·  12 Nov 2013  ·  doi:10.1186/1471-2105-14-s19-s3
ABCoptim: Implementation of Artificial Bee Colony (ABC) Optimization
George Vega Yon
CRAN: Contributed Packages  ·  05 Nov 2013  ·  doi:10.32614/cran.package.abcoptim
Validating a strategy for psychosocial phenotyping using a large corpus of clinical text.
Gundlapalli AV, Redd A, Carter M, Divita G, Shen S, Palmer M, Samore MH
Journal of the American Medical Informatics Association : JAMIA  ·  29 Oct 2013  ·  doi:10.1136/amiajnl-2013-001946
Efficient parameter estimation for models of healthcare-associated pathogen transmission in discrete and continuous time.
Thomas A, Redd A, Khader K, Leecaster M, Greene T, Samore M
Mathematical medicine and biology : a journal of the IMA  ·  10 Oct 2013  ·  doi:10.1093/imammb/dqt021
Population-level effects of clinical immunity to malaria.
Keegan LT, Dushoff J
BMC infectious diseases  ·  11 Sep 2013  ·  doi:10.1186/1471-2334-13-428
A Pilot Study of an Intervention Designed to Promote Walking, Balance, and Self-Efficacy in Older Adults with Fear of Falling
John Dattilo, Lynn Martire, Jinger Gottschall, Elizabeth Weybright
Educational Gerontology  ·  06 Sep 2013  ·  doi:10.1080/03601277.2013.768067
Impact of change to molecular testing for Clostridium difficile infection on healthcare facility-associated incidence rates.
Moehring RW, Lofgren ET, Anderson DJ
Infection control and hospital epidemiology  ·  29 Aug 2013  ·  doi:10.1086/673144
Quantitative models of the dose-response and time course of inhalational anthrax in humans.
Damon J A Toth, Adi V Gundlapalli, Wiley A Schell, Kenneth Bulmahn, Thomas E Walton, Christopher W Woods, Catherine Coghill, Frank Gallegos, Matthew H Samore, Frederick R Adler
PLoS pathogens  ·  15 Aug 2013  ·  doi:10.1371/journal.ppat.1003555
Description of outbreaks of health-care-associated infections related to compounding pharmacies, 2000-12.
Catherine Staes, Jason Jacobs, Jeanmarie Mayer, Jill Allen
American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists  ·  01 Aug 2013  ·  doi:10.2146/ajhp130049
Improved hidden Markov model for nosocomial infections.
Karim Khader, Molly Leecaster, Tom Greene, Matthew Samore, Alun Thomas
Mathematical medicine and biology : a journal of the IMA  ·  19 Jul 2013  ·  doi:10.1093/imammb/dqt013
A visual approach to investigating shared and global memory behavior of CUDA kernels
Paul Rosen
Computer Graphics Forum  ·  01 Jun 2013  ·  doi:10.1111/cgf.12103
Visualizing robustness of critical points for 2D time-varying vector fields
B. Wang, P. Rosen, P. Skraba, H. Bhatia, V. Pascucci
Computer Graphics Forum  ·  01 Jun 2013  ·  doi:10.1111/cgf.12109
Inefficiencies and vulnerabilities of telephone-based communication between U. S. poison control centers and emergency departments.
Mollie R Cummins, Barbara Crouch, Per Gesteland, Anastasia Wyckoff, Todd Allen, Anusha Muthukutty, Robin Palmer, Jitsupa Peelay, Katherine Repko
Clinical toxicology (Philadelphia, Pa.)  ·  23 May 2013  ·  doi:10.3109/15563650.2013.801981
Reduction of Aedes aegypti vector competence for dengue virus under large temperature fluctuations.
Carrington LB, Seifert SN, Armijos MV, Lambrechts L, Scott TW
The American journal of tropical medicine and hygiene  ·  25 Feb 2013  ·  doi:10.4269/ajtmh.12-0488
A multiscale approach to network event identification using geolocated twitter data
Chao Yang, Ian Jensen, Paul Rosen
Computing  ·  30 Jan 2013  ·  doi:10.1007/s00607-013-0285-5
Computational model of HIV-1 escape from the cytotoxic T lymphocyte response
Canadian Applied Mathematics Quarterly  ·  01 Jan 2013  ·  insightnet:38e426e61f4a39f7ef17
Exploration of ICD-9-CM coding of chronic disease within the Elixhauser Comorbidity Measure in patients with chronic heart failure.
Perspectives in health information management / AHIMA, American Health Information Management Association  ·  01 Jan 2013  ·  insightnet:d51b348f90cdb35da129
Large diurnal temperature fluctuations negatively influence Aedes aegypti (Diptera: Culicidae) life-history traits.
Carrington LB, Seifert SN, Willits NH, Lambrechts L, Scott TW
Journal of medical entomology  ·  01 Jan 2013  ·  doi:10.1603/me11242
Uncertainty visualization in forward and inverse cardiac models
Computing in Cardiology  ·  01 Jan 2013  ·  insightnet:ced9c1ebec678721f433
Using natural language processing on the free text of clinical documents to screen for evidence of homelessness among US veterans.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium  ·  01 Jan 2013  ·  insightnet:ab1ba43e96d6a77c205f

2012

A generalized Malfatti problem
Ching-Shoei Chiang, Christoph M. Hoffmann, Paul Rosen
Computational Geometry: Theory and Applications  ·  01 Oct 2012  ·  doi:10.1016/j.comgeo.2010.06.005
Visualizing results from infection transmission models: a case against "confidence intervals".
Lofgren ET
Epidemiology (Cambridge, Mass.)  ·  01 Sep 2012  ·  doi:10.1097/ede.0b013e318258369b
Anote on circle packing
Young Joon Ahn, Christoph M. Hoffmann, Paul Rosen
Journal of Zhejiang University: Science C  ·  01 Aug 2012  ·  doi:10.1631/jzus.c1200010
Decolonization with Mupirocin and Subsequent Risk of Methicillin-Resistant Staphylococcus aureus Carriage in Veterans Affairs Hospitals.
Nelson RE, Jones M, Rubin MA
Infectious diseases and therapy  ·  07 Jul 2012  ·  doi:10.1007/s40121-012-0001-3
Data management and analysis with WRF and SFIRE
Jonathan D. Beezley, Mavin Martin, Paul Rosen, Jan Mandel, Adam K. Kochanski
International Geoscience and Remote Sensing Symposium (IGARSS)  ·  01 Jul 2012  ·  doi:10.1109/igarss.2012.6352419
Clinical Value of an Ambulatory-Based Antibiogram for Uropathogens in Children.
Kevin W Dahle, Ernest K Korgenski, Adam L Hersh, Rajendu Srivastava, Per Hans Gesteland
Journal of the Pediatric Infectious Diseases Society  ·  29 Jun 2012  ·  doi:10.1093/jpids/pis055
StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for Cancer Subtype Characterization.
Lex A, Streit M, Schulz HJ, Partl C, Schmalstieg D, Park PJ, Gehlenborg N
Computer graphics forum : journal of the European Association for Computer Graphics  ·  25 Jun 2012  ·  doi:10.1111/j.1467-8659.2012.03110.x
rgexf: Build, Import, and Export GEXF Graph Files
George Vega Yon
CRAN: Contributed Packages  ·  19 Jun 2012  ·  doi:10.32614/cran.package.rgexf
Model-driven design for the visual analysis of heterogeneous data.
Streit M, Schulz HJ, Lex A, Schmalstieg D, Schumann H
IEEE transactions on visualization and computer graphics  ·  01 Jun 2012  ·  doi:10.1109/tvcg.2011.108
The knockdown resistance mutation and knockdown time in Anopheles gambiae collected from Mali evaluated through a bottle bioassay and a novel insecticide-treated net bioassay.
Fryxell RT, Seifert SN, Lee Y, Sacko A, Lanzaro G, Cornel A
Journal of the American Mosquito Control Association  ·  01 Jun 2012  ·  doi:10.2987/11-6216r.1
Electronic information exchange between emergency departments and poison control centers: a Delphi study.
Mollie R Cummins, Barbara I Crouch, Per Gesteland, Nancy Staggers, Anastasia Wyckoff, Bob G Wong
Clinical toxicology (Philadelphia, Pa.)  ·  22 May 2012  ·  doi:10.3109/15563650.2012.693183
Drugs of last resort? The use of polymyxins and tigecycline at US Veterans Affairs medical centers, 2005-2010.
Huttner B, Jones M, Rubin MA, Neuhauser MM, Gundlapalli A, Samore M
PloS one  ·  16 May 2012  ·  doi:10.1371/journal.pone.0036649
Agreement in classifying bloodstream infections among multiple reviewers conducting surveillance.
Jeanmarie Mayer, Tom Greene, Janelle Howell, Jian Ying, Michael A Rubin, William E Trick, Matthew H Samore, CDC Prevention Epicenters Program
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America  ·  26 Apr 2012  ·  doi:10.1093/cid/cis410
Parenteral to oral conversion of fluoroquinolones: low-hanging fruit for antimicrobial stewardship programs?
Makoto Jones, Benedikt Huttner, Karl Madaras-Kelly, Kevin Nechodom, Christopher Nielson, Matthew Bidwell Goetz, Melinda M Neuhauser, Matthew H Samore, Michael A Rubin
Infection control and hospital epidemiology  ·  01 Apr 2012  ·  doi:10.1086/664767
Rectilinear texture warping for fast adaptive shadow mapping
Paul Rosen
Proceedings - I3D 2012: ACM SIGGRAPH Symposium on Interactive 3D Graphics and Games  ·  09 Mar 2012  ·  doi:10.1145/2159616.2159641
High degree of single nucleotide polymorphisms in California Culex pipiens (Diptera: Culicidae) sensu lato.
Lee Y, Seifert SN, Nieman CC, McAbee RD, Goodell P, Fryxell RT, Lanzaro GC, Cornel AJ
Journal of medical entomology  ·  01 Mar 2012  ·  doi:10.1603/me11108
Single-nucleotide polymorphisms for high-throughput genotyping of Anopheles arabiensis in East and southern Africa.
Lee Y, Seifert SN, Fornadel CM, Norris DE, Lanzaro GC
Journal of medical entomology  ·  01 Mar 2012  ·  doi:10.1603/me11113
The EpiCanvas infectious disease weather map: an interactive visual exploration of temporal and spatial correlations.
Per Hans Gesteland, Yarden Livnat, Nathan Galli, Matthew H Samore, Adi V Gundlapalli
Journal of the American Medical Informatics Association : JAMIA  ·  22 Feb 2012  ·  doi:10.1136/amiajnl-2011-000486
Topological analysis and visualization of cyclical behavior in memory reference traces
A.N.M. Imroz Choudhury, Bei Wang, Paul Rosen, Valerio Pascucci
IEEE Pacific Visualization Symposium 2012, PacificVis 2012 - Proceedings  ·  01 Feb 2012  ·  doi:10.1109/pacificvis.2012.6183557
Visualizing uncertainty in biological expression data
Clemens Holzhüter, Alexander Lex, Dieter Schmalstieg, Hans-Jörg Schulz, Heidrun Schumann, Marc Streit
Visualization and Data Analysis 2012  ·  22 Jan 2012  ·  doi:10.1117/12.908516
From Quantification to Visualization: A Taxonomy of Uncertainty Visualization Approaches.
Potter K, Rosen P, Johnson CR
IFIP advances in information and communication technology  ·  01 Jan 2012  ·  doi:10.1007/978-3-642-32677-6_15
Visualization of Multidimensional Data with Applications in Molecular Biology
[no publisher info]  ·  01 Jan 2012  ·  insightnet:96cd3ee640a4b95e13eb

2011

Strengthening Partnerships along the Informatics Innovation Stages and Spaces: Research and Practice Collaboration in Utah.
Wu Xu, Warren Pettey, Yarden Livnat, Per Gesteland, Deepthi Rajeev, Jonathan Reid, Matthew Samore, R Scott Evans, Robert T Rolfs, Catherine Staes
Online journal of public health informatics  ·  22 Dec 2011  ·  doi:10.5210/ojphi.v3i3.3904
Context-preserving visual links.
Steinberger M, Waldner M, Streit M, Lex A, Schmalstieg D
IEEE transactions on visualization and computer graphics  ·  01 Dec 2011  ·  doi:10.1109/tvcg.2011.183
VisBricks: multiform visualization of large, inhomogeneous data.
Lex A, Schulz HJ, Streit M, Partl C, Schmalstieg D
IEEE transactions on visualization and computer graphics  ·  01 Dec 2011  ·  doi:10.1109/tvcg.2011.250
Nonpinhole approximations for interactive rendering.
Rosen P, Popescu V, Hayward K, Wyman C
IEEE computer graphics and applications  ·  01 Nov 2011  ·  doi:10.1109/mcg.2011.32
Simplification of Node Position Data ;for Interactive Visualization of Dynamic Data Sets.
Rosen P, Popescu V
IEEE transactions on visualization and computer graphics  ·  25 Oct 2011  ·  doi:10.1109/tvcg.2011.268
Long-term care facilities in Utah: a description of human and information technology resources applied to infection control practice.
Jones M, Samore MH, Carter M, Rubin MA
American journal of infection control  ·  10 Sep 2011  ·  doi:10.1016/j.ajic.2011.06.001
Abstract visualization of runtime memory behavior
A. N. M. Imroz Choudhury, Paul Rosen
Proceedings of VISSOFT 2011 - 6th IEEE International Workshop on Visualizing Software for Understanding and Analysis  ·  01 Sep 2011  ·  doi:10.1109/vissof.2011.6069452
Performance of rapid influenza H1N1 diagnostic tests: a meta-analysis.
Chu H, Lofgren ET, Halloran ME, Kuan PF, Hudgens M, Cole SR
Influenza and other respiratory viruses  ·  30 Aug 2011  ·  doi:10.1111/j.1750-2659.2011.00284.x
Visualizing the Effects of Logically Combined Filters
Thomas Geymayer, Alexander Lex, Marc Streit, Dieter Schmalstieg
2011 15th International Conference on Information Visualisation  ·  01 Jul 2011  ·  doi:10.1109/iv.2011.52
An Evaluation of 3-D Scene Exploration Using a Multiperspective Image Framework.
Rosen P, Popescu V
The Visual computer  ·  01 Jun 2011  ·  doi:10.1007/s00371-011-0599-2
Modeling the variations in pediatric respiratory syncytial virus seasonal epidemics.
Molly Leecaster, Per Gesteland, Tom Greene, Nephi Walton, Adi Gundlapalli, Robert Rolfs, Carrie Byington, Matthew Samore
BMC infectious diseases  ·  21 Apr 2011  ·  doi:10.1186/1471-2334-11-105
Ecological niche modeling in Maxent: the importance of model complexity and the performance of model selection criteria.
Warren DL, Seifert SN
Ecological applications : a publication of the Ecological Society of America  ·  01 Mar 2011  ·  doi:10.1890/10-1171.1
A comment on the orthogonalization of B-spline basis functions and their derivatives
Andrew Redd
Statistics and Computing  ·  04 Jan 2011  ·  doi:10.1007/s11222-010-9221-0
Experiences in disseminating educational visualizations
Nathan Andrysco, Paul Rosen, Voicu Popescu, Bedřich Beneš, Kevin Robert Gurney
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)  ·  01 Jan 2011  ·  doi:10.1007/978-3-642-24031-7_24
Public health communication with frontline clinicians during the first wave of the 2009 influenza pandemic.
Catherine J Staes, Amyanne Wuthrich, Per Gesteland, Mandy A Allison, Molly Leecaster, …, Andrew T Pavia, Brent Wallace, Adi V Gundlapalli, Matthew Samore, Carrie L Byington
Journal of public health management and practice : JPHMP  ·  01 Jan 2011  ·  doi:10.1097/phh.0b013e3181ee9b29
Socio-economic status and HIV/AIDS dynamics: A modeling approach
World Journal of Modelling and Simulation  ·  01 Jan 2011  ·  insightnet:03efe0cd90bb65df9909

Residual biological surrogate aerosol risk reduction during disrobing litter-bound manikin patients using two dry air treatments for cold regions.
Clayton Garner, Darrah Sleeth, Jeremy Slagley, Kimberley Shoaf, Vera Peters, Faina Feldman, Julie Skipper, Gaiven Varshney, Douglas Lewis
American journal of disaster medicine  ·  [no date info]  ·  doi:10.5055/ajdm.0518