Extract Rt estimation from a model fit

Extract Rt estimation from a model fit

summarize_rtestimate(x, level = 0.95, ..., notes = "")

# Default S3 method
summarize_rtestimate(x, level = 0.95, ..., notes = "")

# S3 method for class 'cv_poisson_rt'
summarize_rtestimate(
  x,
  level = 0.95,
  lambda = c("lambda.1se", "lambda.min"),
  ...,
  notes = "cv_poisson_rt"
)

# S3 method for class 'poisson_rt'
summarize_rtestimate(x, level = 0.95, lambda = NULL, ..., notes = "poisson_rt")

# S3 method for class 'epinow'
summarize_rtestimate(x, level = 0.95, ..., notes = "")

# S3 method for class 'estimate_R'
summarize_rtestimate(x, level = 0.95, ..., notes = "")

# S3 method for class 'Rt'
summarize_rtestimate(x, level = 0.95, ..., notes = "")

Arguments

x

Object to extract Rt from.

level

Confidence level for the confidence interval.

...

Additional arguments passed to methods.

notes

String. Optional notes to add to the summary.

lambda

The Poisson parameter (cv_poisson_rt).

Details

The estimate_R method is for the EpiEstim package. Currently, only levels in 50%, 90% and 95% confidence levels are allowed.

The Rt method is for the EpiLPS package.