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Code for Papers

Work in Progress

This chapter is a placeholder and will be expanded with detailed best practices for writing reproducible research code.

Overview

This chapter will cover best practices for writing code that accompanies academic papers and research outputs.

Topics to be Covered

  • Reproducible research principles
  • Code organization and structure
  • Documentation and README files
  • Data management and sharing
  • Version control for research
  • Computational environments (Docker, conda, etc.)
  • Code archiving and DOI assignment
  • Licensing considerations for research code
  • Peer review and collaboration workflows

This content will be expanded in future updates.